BAC Information

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BAC

Clone NameMSMg01-362P01
Chromosome7 (Build37)
Map Location 109,043,246 - 109,043,724
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1
Downstream gene3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P01.T7 (MSMg01no362_p01.b1)MSMg01-362P01.TJ (MSMg01no362_p01.g1)
ACCAG471504AG471505
length762755
length of high quality
(start - end)
402 (46 - 447)480 (77 - 556)
definitionCHROMAT_FILE: MSMg01no362_p01.b1 PHD_FILE: MSMg01no362_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:29 2005CHROMAT_FILE: MSMg01no362_p01.g1 PHD_FILE: MSMg01no362_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
GATTTCTCTGTATACCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGG
CTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGTCTCCCGAGTGCTGGGA
TTAAAGGCGTGTGCCACCATGCCCAGCAAGTTCATTCTTTAACTGGCATT
AGAGCCTACTTCTTCAGGATTCCAGAGAATACCAAAGATGAGCTGAGATA
TCCAGACTCATGGACTGAACAACTATTGAATTCTTGGAATTTCCGTTGGT
AGATAGCCATTGTTGGACTAGCTGGATCAGAGTCTGTAAGCCACTCTAAT
AAATCCCCTAAAAAAATATAGAATATGTGGGAACCTGACTAACAATACTA
TTCCAGCACTCTATATTTTAACTCAGCTAATCATTGAATTAAACCAACTT
ACAGATGAGAAACTCATGGCACTAGAGAGGTTGGGTAACTCACCTTGTCA
TTCAGCCAACCTATATTAGGAGAGAGTACTTGCCTAGCCCTTCTCATTAC
GCTGTATAATTCGTCCTCACCCTTTACACTGAATACTTGTTCCCCACAAG
ACTGTTGTGATTGCAGTTGGGCCCCAAACTTTTTTATTTTTCCTCCATGA
CCACCTATGGTTCGTCTCTCCTCCTTTTATGGAAGAGTTCCTCCCACTCT
AACTCCTAACTATCATCCTTCCCTACTCGGTCCTCCTCTCTTCACGTAAT
TGTTCTTTTAGG
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCTTTACAGAAATTACAGGC
TGGTTGCCATAACCATCCAGCAATCATGTGGGTTCTGAGGACCCAAACAC
CAATCCTGGCTTCTTTTACAACAAGCACTTTAACCCCTAAGGTATCTCCC
CAGGCCTGTACATTCTTTGTCTACGCTGTTTCTTCTGTAACTAGCATGAT
AATCTGCCTGGTTTTCCTCCTGTTCTTGGCTCTGGTGAAGAGTGATGAGA
TAGAGCTGTTCAAGAGGTTCCGTATGTGCTTCCTATCGAATCTGATTGTA
TGGCCCAAGAGGTCAGCTTCAGCTTCAAACGTTTTCAAACGTTAGCAAGC
TCTGCTTATTAAAATTGTAGCACTCAGGGACCTGAGACAAGAGGATGTGA
AGTTCAAGATTAGACTGGGCTATGTAACAAGCTCAATGCCAGCCTGAAAT
GTATAAGCCCCTGTCTCTCACAAAAACAGGTACAAATTTTATAAATAAAA
ATAACAGCCAGTGAGATAGTTCAGAGGGTAGAGGCACTTGCTAACAAACC
AAGGACCCAACTTCAATCCCTGGACCCACATGGTAGAAAGAGAAAGCTGC
CTCTCACAAGTTGTCTTGTGATCTGCATGTGCACACTGTACCAGTTCTCT
GCTGCCTTGCACACTCAAAAAATGTGCATCACAAAAAAATTGTTAACTAC
ATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p01.g1 MSMg01no362_p01.g1 CHROMAT_FILE:
MSMg01no362_p01.g1 PHD_FILE: MSMg01no362_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:29 2005
         (480 letters)



>mm_chr7_109043073_109043952
          Length = 880

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtctttacagaaattacaggctggttgccataaccatccagcaatcatgtgggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tctgtctttacagaaattacaggctggttgccataaccatccagcaatcatgtgggttct 593

                                                                       
Query: 61  gaggacccaaacaccaatcctggcttcttttacaacaagcactttaacccctaaggtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaggacccaaacaccaatcctggcttcttttacaacaagcactttaacccctaaggtatc 533

                                                                       
Query: 121 tccccaggcctgtacattctttgtctacgctgtttcttctgtaactagcatgataatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tccccaggcctgtacattctttgtctacgctgtttcttctgtaactagcatgataatctg 473

                                                                       
Query: 181 cctggttttcctcctgttcttggctctggtgaagagtgatgagatagagctgttcaagag 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 cctggttttcctcctgttcttggctctggtgaagagtgatgagatagaactgttcaagag 413

                                                                       
Query: 241 gttccgtatgtgcttcctatcgaatctgattgtatggcccaagaggtcagcttcagcttc 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gttccgtatgtgcttcctatcaaatctgattgtatggcccaagaggtcagcttcagcttc 353

                                                                       
Query: 301 aaacgttttcaaacgttagcaagctctgcttattaaaattgtagcactcagggacctgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaacgttttcaaacgttagcaagctctgcttattaaaattgtagcactcagggacctgag 293

                                                                       
Query: 361 acaagaggatgtgaagttcaagattagactgggctatgtaacaagctcaatgccagcctg 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 292 acaagaggatgtgaagttcaagattagactgggctatgtagcaagctcaatgccagcctg 233

                                                                      
Query: 421 aaatgtataagcccctgtctctcacaaaaacaggtacaaattttataaataaaaataac 479
           ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 232 aaatgtataagcccctgtctctcacaaaaacaggtgcaaattttaaaaataaaaataac 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)