BAC Information

Click to search

BAC

Clone NameMSMg01-362P16
Chromosome7 (Build37)
Map Location 57,859,667 - 57,860,174
singlet/doubletsinglet
Overlap geneNell1
Upstream geneDbx1, Htatip2, Prmt3, Slc6a5, 4933405O20Rik
Downstream geneEG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971, LOC668779, Tmem16e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P16.T7 (MSMg01no362_p16.b1)MSMg01-362P16.TJ (MSMg01no362_p16.g1)
ACCAG471533AG471534
length1,551764
length of high quality
(start - end)		---518 (77 - 594)
definitionCHROMAT_FILE: MSMg01no362_p16.b1 PHD_FILE: MSMg01no362_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:33 2005CHROMAT_FILE: MSMg01no362_p16.g1 PHD_FILE: MSMg01no362_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTAAAATATATNATCATCTTCCTTTTTTTCTTTAAAAATATACATAAA
TTATAATATATCAGATGAAGCCGTAACACGCGGTCTATAAACGGAGTGTA
GGCGCGAGAGGAAAGAGAAATGCGAGAATATGATGAACACGAGTATAACG
TACAGAAAAACAGAACAGAATAACTACTACCACCCACGACTACCTCACAA
AAAGACAAGGGAGGTGAGGTAACACAAACCACAACAAACAATCAGGAACA
CAAGTATATCAGTACAGTGCGCGCGGCACCGACTATAGACAAGTCGTTAT
TGTTCGCCTATATGCCGCCGCCCCTACACAACCAACCCAATTCATCGTTA
TGTGTATAACAGAAGAGCATACCGAAAGAGCACAAGGAGNGCAACCACCT
ATCCCCTAACACTCACCCTCCATCCTAGTAACTTTTACCACCCTCCCGCC
GCACGCCTCGTGACACATACGTGACTACCTGCACCACCCACGCGTATCAC
AACATCATACAATATGCATCCAGAAATACACAAACTCCACACACAATATA
ATAAGCACACAACAACACCAGCAACGGAGATAGAGAACTACACCACACGA
TGAAAGTAAGAGGGATTCGTCGATGAACAGGCAAGGATCTACATACGCGC
CCGAGCCATCGCGTAGTCGCGCCGCGCATATTAATAACACACGACACGAC
AAATGTATACACCACAACGTAACGACAAATATACGCGCGCGACACGAGAT
ATAACTACACATACCATGAATGTCTGAACGAGCCGCCACAAATATACACA
TATCGCTGGATGACGTGTCGCTGTGACAGGTCGTTATTGCATAATATACA
TGCGGCACGCGGACGCGAACCGCCGAGCACNCAATATGTGCGGAAGTCGC
ATCCGTGAGTATCTCGACACGCCGCGCCACGCGCACGATCACCCAGCGCA
GCCGTTATGTCTCATCCTACACGAGCATGTCACGTTGTCTCGATTCACGT
CTCTCGTTTATGATTAGCCAGACCACGCGGCCGCACACCGATGTAATACA
TACCCACATACTCGACGTGAGTCCGCNCTCGCAACACAGAGCTAGAATAG
ANTATGATACGCGCACTATAAGCCACAGCACNTGCGCAGACAACCATACG
TATCTGTGTATAGTCTATGTACATCCGCATGACAGCGCGCGCTCGTCACA
ATAGAAAATATAACCGAGCCACCCTGCANATCACTGTCGTCGTCCGACAC
GTCATGCGAACGNCAGCTCAGCATGTGCGGTGCGTGAGCGAACAGAAGCG
ACTACACACAGAGCAGTGTACAGCGCATGATGATGGTCGGCACGACGGAC
GAAGGCTGAGTATATAGTAGTGTGACAGACACCACACTGAGCACTGCGAT
CACTACATCACACATAGATACANTGTGTGTACGACGTAGCTCAGCACGTC
GATNGACATACGATCGCCGCCGGTCGAGCGATATCGCATATTCTGCAGTN
GATACAGTTGTCGTCGTATATCGATCAAAGAGCGCATAACACACGACTAT
N

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAAAAGAACAACCTTGGATA
GGTTTGTAGATGAAAGCCAGACACTATCACTTTGCAATAAATCAGTTCTT
CTAATTGCTAACACTTGTCAGTGACTGAAACCTTTCACTTATTCCCGTTT
CCTTGAATAAATACTTAGAATGAGTGTGAAGAATAAGCCTGGCCCTGTCC
TAGGTCTTGACTCTTCAGTGATGGATTCCTCAATCACTCTTACAGCCTAG
GGAATATTGCACTGTATGTGCTTAGCTGACTTTCTCCAAAGAACAAAGGG
AAGTCACTGAATGCAGAGTCTGAAGAAGGTTACATGGTTCTATTGTGTTT
CAAAAGGAACAAATCAGATGCACTGCAGGAAATAAGAAAAAGAAAAGTAA
ACTATAGGTAGATACATGTTAACAGAGAATACTTTTAAGTAAAAAAAAAA
AAACTGGGAAGCTTCCAATGCACACACATGTATTTTCATATACACATGTA
CCCACACATGTGCAGAAACATAAATACACCCTAATTCATACCAGATACAC
NCNTACTAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAT
AGAGAGAAAGAAAGAAAGAATGATAGAAAGACAGAAGAAAGAAAGAATGA
TAGAACGAAAGAAAGAAATATNGAAAGAGAGAACTCTCCTGGAGAGAGAA
CATGAAACTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p16.g1 MSMg01no362_p16.g1 CHROMAT_FILE:
MSMg01no362_p16.g1 PHD_FILE: MSMg01no362_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:33 2005
         (518 letters)



>mm_chr7_57859463_57860374
          Length = 912

 Score =  901 bits (466), Expect = 0.0
 Identities = 500/514 (97%), Gaps = 6/514 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaaaagaacaaccttggataggtttgtagatgaaagccagacactatcactttgcaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gaaaagaacaaccttggataggtttgtagatgaaagccagacactatcactttgcaataa 653

                                                                       
Query: 65  atcagttcttctaattgctaacacttgtcagtgactgaaacctttcacttattcccgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 652 atcagttcttctaattgctaacacttgtcagtgactgaaacctttcacttactcccgttt 593

                                                                       
Query: 125 ccttgaataaatacttagaatgagtgtgaagaataagcctggccctgtcctaggtcttga 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 592 ccttgaataaatacttagaatgagtgtgaagaataagcctgaccctgtcctaggtcttga 533

                                                                       
Query: 185 ctcttcagtgatggattcctcaatcactcttacagcctagggaatattgcactgtatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctcttcagtgatggattcctcaatcactcttacagcctagggaatattgcactgtatgtg 473

                                                                       
Query: 245 cttagctgactttctccaaagaacaaagggaagtcactgaatgcagagtctgaagaaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttagctgactttctccaaagaacaaagggaagtcactgaatgcagagtctgaagaaggt 413

                                                                       
Query: 305 tacatggttctattgtgtttcaaaaggaacaaatcagatgcactgcaggaaataagaaaa 364
           |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 412 tacacggttctattctgtttcaaaagcaacaaatcagatgcactgcaggaaataagaaaa 353

                                                                       
Query: 365 agaaaagtaaactataggtagatacatgttaacagagaatacttttaagtaaaaaaaaaa 424
           ||||||     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agaaaa-----ctataggtagatacatgttaacagagaatacttttaagtaaaaaaaaaa 298

                                                                       
Query: 425 aaactgggaagcttccaatgcacacacatgtattttcatatacacatgtacccacacatg 484
            | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ta-ctgggaagcttgcaatgcacacacatgtattttcatatacacatgtacccacacatg 239

                                             
Query: 485 tgcagaaacataaatacaccctaattcataccag 518
           ||||||||||||||||||||| ||||||||||||
Sbjct: 238 tgcagaaacataaatacacccaaattcataccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 912
Length adjustment: 10
Effective length of query: 508
Effective length of database: 902
Effective search space:   458216
Effective search space used:   458216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |