BAC Information

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BAC

Clone NameMSMg01-362P23
Chromosome7 (Build37)
Map Location 68,850,002 - 68,850,445
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P23.T7 (MSMg01no362_p23.b1)MSMg01-362P23.TJ (MSMg01no362_p23.g1)
ACCAG471547AG471548
length758773
length of high quality
(start - end)
484 (51 - 534)474 (81 - 554)
definitionCHROMAT_FILE: MSMg01no362_p23.b1 PHD_FILE: MSMg01no362_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:34 2005CHROMAT_FILE: MSMg01no362_p23.g1 PHD_FILE: MSMg01no362_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAA
AATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTC
CTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTACACATTCCC
AAGGAACTCCACAATATGTACTCACTGATAATGGATATTATCCCAAACCT
AAATACCCCAGATATAGATAAATTTCCTAACACCTGAAACTCACAAAAAT
GAGACTGAATGTGGAACCATGCCCCTCCTAAAAAGGGAGCAAAAACCCTT
GTAGGAGT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTGAAAACAATGTTTA
TATGATGTGAATTTCACAACAGAGCATGGTGCATTTAGAATAATCAATGT
GATTTTAAAGGAGCATTATATTTTCTGATGAATATATACTTATAAGTTGT
TTAAGACTGTCAGGAATAAAGCCGGGCATGGTGGCACATGCCTTTAATCT
CAGCACTTGGGAGGCAGAGGTAGATGGATTTCTGAATTCGAGGCCAGCCT
GGTCTACAAAGTGACTTTCAGGACAGCCAGGGAAACCCATTCTTGAAAAA
GAAAACAAACAAAAAAAACCAAAACAAAACAAAAAAAAAAAACAAAACAA
AACAAAAAAAAAAGACTGTCAGTGTACTGGCTAGTTTTGTGTCAACTTGA
CACAGCTGGGTTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTC
CATGAGATCCAAATGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAA
GGCCCCTTGTGGGTGGTGCCATCTCTGGGCTGGNAGGCCTGGTTCTATAA
GAGAGCAGGCTGAGCAAGCCGGGGAGGCAAGCCCGTAAAGACATTCCTTC
ATGGCCTCTGCATCAACTCTTGGTTTCTGAACTGCTTGAGTCCCGCCCTG
ACTTCCTTTTGTGGAGGACACCAAGGGGGAAATGGAAACCCAAAAAAACC
TTTCCCTCCCACCTTGTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p23.g1 MSMg01no362_p23.g1 CHROMAT_FILE:
MSMg01no362_p23.g1 PHD_FILE: MSMg01no362_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:34 2005
         (474 letters)



>mm_chr7_68849802_68850675
          Length = 874

 Score =  721 bits (373), Expect = 0.0
 Identities = 436/475 (91%), Gaps = 32/475 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttgaaaacaatgtttatatgatgtgaatttcacaacagagcatggtgcatttagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttgaaaacaatgtttatatgatgtgaatttcacaacagagcatggtgcatttagaa 260

                                                                       
Query: 61  taatcaatgtgattttaaaggagcattatattttctgatgaatatatacttataagttgt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatcaatgtgattgtaaaggagcattatattttctgatgaatatatacttataagttgt 320

                                                                       
Query: 121 ttaagactgtcaggaataaagccgggcatggtggcacatgcctttaatctcagcacttgg 180
           |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ttaagactttcaggaataaagccgggcatggtggcacatgcctttagtctcagcacttgg 380

                                                                       
Query: 181 gaggcagaggtagatggatttctgaattcgaggccagcctggtctacaaagtgactttca 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggcagaggtaggtggatttctgaattcgaggccagcctggtctacaaagtgactttca 440

                                                                       
Query: 241 ggacagccagggaaacccattcttgaaaaagaaaacaaacaaaaaaaaccaaaacaaaac 300
           ||||||||||||||||||||||||||||||         ||||||              |
Sbjct: 441 ggacagccagggaaacccattcttgaaaaa---------caaaaa--------------c 477

                                                                       
Query: 301 aaaaaaaaaaaacaaaacaaaacaaaaaaaaaagactgtcagtgtactggctagttttgt 360
           |||||       |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 478 aaaaa-------caaaacaaaacaaaaaaaaaagactgtcagtgaactggctagttttgt 530

                                                                       
Query: 361 gtcaacttgacacagctgg-gtttatcacagagaaaggagcttcagttgaggaaatgcct 419
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtcaacttgacacagctggagtt-atcacagagaaaggagcttcagttgaggaaatgcct 589

                                                                  
Query: 420 ccatgagatccaaatgtaaggcattttctcaattagtgatcaagggggaaaggcc 474
           ||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ccatgagatccatctgtaaggcattttctcaattagtgatcaagggggaaaggcc 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)