BAC Information

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BAC

Clone NameMSMg01-363N20
Chromosome7 (Build37)
Map Location 125,121,173 - 125,155,949
singlet/doubletdoublet
Overlap genenone
Upstream geneXylt1, LOC669758
Downstream geneRps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363N20.T7 (MSMg01no363_n20.b1)MSMg01-363N20.TJ (MSMg01no363_n20.g1)
ACCAG472200AG472201
length756760
length of high quality
(start - end)		592 (33 - 624)574 (80 - 653)
definitionCHROMAT_FILE: MSMg01no363_n20.b1 PHD_FILE: MSMg01no363_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:43 2005CHROMAT_FILE: MSMg01no363_n20.g1 PHD_FILE: MSMg01no363_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,155,523 - 125,155,949)(125,121,173 - 125,121,746)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCATGCT
TCTCGCTTTTAAGATTCTCTTCCTTCTCTACCCTTTAGGAGTCCAGGGAG
TTCATTTACATATTTGGGCCAATCTGGTGAGAGGTTTGGGATGGCTAAGT
ACATGCTGGGTGGGTAGCTGGTGGGATTCCTTAACAGAAGCCATCATATC
CCTCATCCCTCTGGGCTGCTCCAGAAGTACGCCATTCGGGGGAGTGGTGC
CTTTATGGTCACATGCTCATATGTTTAAGTGTTTGGTCCCCAGTCAATGG
CACTATTTGGTAAGGATTAGTAGGTGTGGCCTTATTGGAAGAGGTGTGTC
ACTGAGGATGAGCTTTGAGGTTTCAAAAGCCCATGCTCTTCTAATTAGTT
CTCTCTACGTGTCATGACTGTGGTTTAGAGGTGAGCTTTCAGCTGCTGAT
CCAACTACCTTCTACCATCTACCTCTGTTCCTCCACTACAAAACTTTGAC
CTTCTGAAACCATCAGCTCTGATTAATTTCTTTCTTCTATAAGTTAATTA
CCTTGGTTTTGGTGCCTTACTACAGTAGTAGAAAAGTAGTTAAGGCAATG
GTGATTGTGGCAATGATGGTGAGGATGGTGATGGTTGTGATTGTTGTGGN
GNNNNNTNNNNNTTNTTTNNTNNNNNNTNTTTNTNNTTTTTTTTTTTTTT
TTTNTNTTTTTTTTTTTTTTTNNTNTNTTTTTTTTNTTNNNNTTTTTTNT
TTTTTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAATACCAAATAAGAAG
AGGCCAAGCTCCCTGCTAGTAACATTAGAAAGCAGCTAATGATCACAAAG
CTTGGAGCCCAAATCCACCTTCTGTGACAGAGTTAGTTGATGACCCTTGG
AGAACAAATGGATTTTTCATGAATAAGCACACACACAAAAATATATATGG
CTTTCTATGACAACTTTTTTAAATCCCAAGGACATAAGAAGTTAAGAGTC
TTAGAGTCTATTCAAAAGAAAACTTCTTAAAATCCTAACAAAGAGCTAGA
GATTACAATAGTTTATAATCCTGACTACTGTTGAGGCTGAGACAGGAGGC
TTGTGAGTTGAAGTCCTGCCTGGACCATATACTGAGTTCAAAGCCAGCCT
GGGCAATGTAGTAAGACTATGTCTCAAAATAAAAAGGATGATGGAAATTT
AACTTACCTAACATGTGTGAGGAGCAGAATCCATCACCTGTACTTTAAAA
ACAAAAAGTCTAAAAAAGGTTTTACTGTTTTAAAACATTGCTTGCTAACA
GGAGGTACACTCATGCTGACAGGCAGGTTTGCATAGAAGCTTTCCCTTGA
CTGTCCATGGCAACCTCCTGTGGTTCAATAGCCTCTGTAATCANGAAAAA
GTGGACACAGCCCTAACTGCACCTTAAAAACAGTTGGAACTTTTTTTAAA
GTACCAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_n20.b1 MSMg01no363_n20.b1 CHROMAT_FILE:
MSMg01no363_n20.b1 PHD_FILE: MSMg01no363_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:43 2005
         (592 letters)



>mm_chr7_125155523_125156514
          Length = 992

 Score =  779 bits (403), Expect = 0.0
 Identities = 421/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatcatgcttctcgcttttaagattctcttccttctctaccctttaggagtcca 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggaattcatcatgcttcaggcttttaagattctcttccttctctaccctttaggagtcca 368

                                                                       
Query: 64  gggagttcatttacatatttgggccaatctggtgagaggtttgggatggctaagtacatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggagttcatttacatatttgggccaatctggtgagaggtttgggatggctaagtacatg 308

                                                                       
Query: 124 ctgggtgggtagctggtgggattccttaacagaagccatcatatccctcatccctctggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgggtgggtagctggtgggattccttaacagaagccatcatatccctcatccctctggg 248

                                                                       
Query: 184 ctgctccagaagtacgccattcgggggagtggtgcctttatggtcacatgctcatatgtt 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 247 ctgctccagaagtacgccattcgggggagtggtgcctttatggtcatatgctcatatgtt 188

                                                                       
Query: 244 taagtgtttggtccccagtcaatggcactatttggtaaggattagtaggtgtggccttat 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 187 taagtgtttggtccccagtcaatggcactatttggtaaggattaggaggtgtggccttat 128

                                                                       
Query: 304 tggaagaggtgtgtcactgaggatgagctttgaggtttcaaaagcccatgctcttctaat 363
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 127 tggaagaggtgtgtcactgaggatgagctttgaggtttcaaaagcccatgatcttctaat 68

                                                                       
Query: 364 tagttctctctacgtgtcatgactgtggtttagaggtgagctttcagctgctgatccaac 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 67  tagttctctctacgtgtcatgactgtggtttagaggtgagctttcagctgctgagccaac 8

                  
Query: 424 taccttc 430
           |||||||
Sbjct: 7   taccttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_n20.g1 MSMg01no363_n20.g1 CHROMAT_FILE:
MSMg01no363_n20.g1 PHD_FILE: MSMg01no363_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:43 2005
         (574 letters)



>mm_chr7_125120973_125121946
          Length = 974

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaataccaaataagaagaggccaagctccctgctagtaacattagaaagcagctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaataccaaataagaagaggccaagctccctgctagtaacattagaaagcagctaa 260

                                                                       
Query: 61  tgatcacaaagcttggagcccaaatccaccttctgtgacagagttagttgatgacccttg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgatcacaaagcttggagcccaaatccacctcctgtgacagagttagttgatgacccttg 320

                                                                       
Query: 121 gagaacaaatggatttttcatgaataagcacacacacaaaaatatatatggctttctatg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gagaacaaatggatttttcatgaataagcacacacaaaaaaatatatatggctttctatg 380

                                                                       
Query: 181 acaacttttttaaatcccaaggacataagaagttaagagtcttagagtctattcaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaacttttttaaatcccaaggacataagaagttaagagtcttagagtctattcaaaaga 440

                                                                       
Query: 241 aaacttcttaaaatcctaacaaagagctagagattacaatagtttataatcctgactact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacttcttaaaatcctaacaaagagctagagattacaatagtttataatcctgactact 500

                                                                       
Query: 301 gttgaggctgagacaggaggcttgtgagttgaagtcctgcctggaccatatactgagttc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gttgaggctgagacaggaggcttgtgagttgaagtcctgcctggaccatatagtgagttc 560

                                                                       
Query: 361 aaagccagcctgggcaatgtagtaagactatgtctcaaaataaaaaggatgatggaaatt 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagccagcctgagcaatgtagtaagactatgtctcaaaataaaaaggatgatggaaatt 620

                                                                       
Query: 421 taacttacctaacatgtgtgaggagcagaatccatcacctgtactttaaaaacaaaaagt 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacttacctagcatgtgtgaggagcagaatccatcacctgtactttaaaaacaaaaagt 680

                                                                       
Query: 481 ctaaaaaaggttttactgttttaaaacattgcttgctaacaggaggtacactcatgctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaaaaaaggttttactgttttaaaacattgcttgctaacaggaggtacactcatgctga 740

                                             
Query: 541 caggcaggtttgcatagaagctttcccttgactg 574
           |||||||||||||||||| |||||||||||||||
Sbjct: 741 caggcaggtttgcatagaggctttcccttgactg 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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