BAC Information

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BAC

Clone NameMSMg01-364A05
Chromosome7 (Build37)
Map Location 19,567,504 - 19,567,915
singlet/doubletsinglet
Overlap genenone
Upstream geneCeacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2
Downstream geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364A05.T7 (MSMg01no364_a05.b1)MSMg01-364A05.TJ (MSMg01no364_a05.g1)
ACCAG472312AG472313
length783789
length of high quality
(start - end)		417 (47 - 463)436 (72 - 507)
definitionCHROMAT_FILE: MSMg01no364_a05.b1 PHD_FILE: MSMg01no364_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:57 2005CHROMAT_FILE: MSMg01no364_a05.g1 PHD_FILE: MSMg01no364_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCTCGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCG
GAATTCTCTGAAAGATTCACAGTGTTCTTAACTGTTGAGCCATCTCTCTA
GCCTCCACAGTTAGGAATTCTTTTCTCTTTTTTTTCTTTTTATTCTTCTG
AGACAACATCTCTCTGTGTAGTCCTGGCTGTCCTGGAACTTACTGTATAA
ACCAGGCTGGCCTCTAAAGGCATGCACCACGCAGGCCTAGCTCACAGTTG
AGAATTCTTGTTGCTAGCGTCTACTCTGCAGTATCGTATGGAATGAGGGG
TGTTGAGACAGAGTCCTGCTGCAGATTCCTGCCTTACCTCCAATCTGCTA
TGTAGCACAGGCTGGCCTCAACCTGCAGTGAACCCCCTGCCTCTGCCTCC
TCAGTGAGTGTTTTCTTTTTCATTTTTTCCCCTCCACATTTAGTGTTGGA
GATGGAATTCAGGGTAGTGTGCTGTCTTGGCAAGCGCTCTACCACTGGAC
CACGCCTCCATCCCTGTAATGGCTTTTTATGTACATGAAATCCAGCCATT
ATCCACATTGGACTTGGCCTGTCAAGATGGTTCACTGGATAACGCTGCTT
TGTCGTTATCCTGGATAACTGACTTTCTGTTTCTAGTATTTCCCTTCTTG
GCCCATGGTTATATATCGCTCTTTTTGTGTCCCTGTTTTTTCCTCTCTCT
ATTTTTTTCCTTTTTTTTATTTGTGTTTATCTCACTGCGTGTTGCATGTC
TCCCCTCCTCCACTTATTATTTCTTTATTACCT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCATTCTTGATATGTGCCACCAAATCTGGCTT
AATCACACTTTTTCAAAATTTTAAAATCTCACTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTAGGCATGGGGCACATGCAAGTG
TGCTGTAGAGGTCTGAGGTCAAATTTCAGGAGTTGGTTCTCTTATTCCAT
CCTGTGGAAGAACCATATAGCTGGATATAGTGGTATACAGCTGTAGTCTA
GGAGCTTGAGAGATGGAGGCAGGCAGGGGGATCACCAATTAATGCCTATT
AATTATAGCATGGGCTATACAATAAAACCCAACCTCTGGAAAAAAAAGAT
TAATTACAGTAAATGAATAAACTTTAGTTGCAGTCTGATGATTCTGTGGC
ACATGAGCCTCAGTTTCTCCATCTGGAAAGTGGGGGTAAATCCCCTAATT
TTTCCTTGGAGCCTGCCTTTCTGAAGGTTTGGTAGCCTCACCCCATCCAC
CTGTTTTGAAACCCCCTTGTCCGTGTTCCTAGCCGAGGAGGGCTGACTCA
AAAGAACACCCCCGAAGTAATCTGGGGCGAGGGTTTCTTGCAGTGACAAG
TCCGTGGCAGACCGCTGCCTTTTCTTGCGTTTAATTTCGATTAGTGCTGT
GGTTACCGTCCCCTGTCCGCCCGGGGATGCTGCAGTCTACTCTTCTACAT
CACGTCCGTTCTCGCCTCCGTCTCCGCGGCCTGACCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_a05.g1 MSMg01no364_a05.g1 CHROMAT_FILE:
MSMg01no364_a05.g1 PHD_FILE: MSMg01no364_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:57 2005
         (436 letters)



>mm_chr7_19567280_19568115
          Length = 836

 Score =  716 bits (370), Expect = 0.0
 Identities = 408/436 (93%), Gaps = 24/436 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttgatatgtgccaccaaatctggcttaatcacactttttcaaaattttaaaatctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttcttgatatgtgccaccaaatctggcttaatcacactttttcaaaattttaaaatctca 284

                                                                       
Query: 61  cttatttatttatttatttatttatttatttatttatttatttatttaggcatggggcac 120
                                   |||||||||||||||||||||||||||||| |||||
Sbjct: 285 ------------------------tttatttatttatttatttatttaggcatgaggcac 320

                                                                       
Query: 121 atgcaagtgtgctgtagaggtctgaggtcaaatttcaggagttggttctcttattccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 atgcaagtgtgctgtagaggtctgaggtcaaatttcaggagttggttctcttatttcatc 380

                                                                       
Query: 181 ctgtggaagaaccatatagctggatatagtggtatacagctgtagtctaggagcttgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtggaagaaccatatagctggatatagtggtatacagctgtagtctaggagcttgaga 440

                                                                       
Query: 241 gatggaggcaggcagggggatcaccaattaatgcctattaattatagcatgggctataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggaggcaggcagggggatcaccaattaatgcctattaattatagcatgggctataca 500

                                                                       
Query: 301 ataaaacccaacctctggaaaaaaaagattaattacagtaaatgaataaactttagttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 ataaaacccaacctctggaaaaaaaagattaattacagtaaatgaataaactttagttgt 560

                                                                       
Query: 361 agtctgatgattctgtggcacatgagcctcagtttctccatctggaaagtgggggtaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtctgatgattctgtggcacatgagcctcagtttctccatctggaaagtgggggtaaat 620

                           
Query: 421 cccctaatttttcctt 436
           | ||||||||||||||
Sbjct: 621 ctcctaatttttcctt 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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