BAC Information

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BAC

Clone NameMSMg01-364E23
Chromosome7 (Build37)
Map Location 28,980,775 - 28,981,150
singlet/doubletsinglet
Overlap genenone
Upstream geneSnrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b
Downstream geneEid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364E23.T7 (MSMg01no364_e23.b1)MSMg01-364E23.TJ (MSMg01no364_e23.g1)
ACCAG472538AG472539
length802796
length of high quality
(start - end)		386 (56 - 441)---
definitionCHROMAT_FILE: MSMg01no364_e23.b1 PHD_FILE: MSMg01no364_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:22 2005CHROMAT_FILE: MSMg01no364_e23.g1 PHD_FILE: MSMg01no364_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGGCGAANTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGGTCCAGTCTGGATCTATAGAGAGAGTTCCAGGG
CACCTGGGCGCTACACAGTGAGACCTGTCTGAAAAAAAAAGAGAGAGAGA
AGGCAAGGCTGGGGAGCCCAGCTTTACCTCAGACTCACTGTAGTTTGACC
TTGACCCCTGACTCTCCTGCTTCCACCTCCCAGCCTGCTGGGTCTCCAGG
CCTGCGCCTATGACCAGGCTCAAGCCTTTTTCAGATAGAAAGGCAGGCAT
CCTGGGCCTCTGGGTGTGCCTTTAACCACTTTCTTCCTTGGAGTTCTGGT
TTTTTTTTTTTTTGACTTCTCCCTTTAGGAAGAGCTTCAGTGCCTTCCTT
CACCAGCGGCTAAAACTTTCCTTTGTCTTCAGTTGTCCTGAAGAAAAAGG
AATTCTTCATTTCATGGAAGTTCAAACACCTAAAAGCAGAAAGGCCTATA
ATATTTCCTGCCCAATAATAAATCCCGGTGTCGCCTCTAGATGGGGTGCA
TCCCCCCTCCCNCTACGCTCCTTGGTTGGTGTTCTAAATAAATTTCAAGG
TCGCGATAGAAGCAGGGCGGTATGATTATTCGTGTTTGTCCCGTNTGGCC
GCCAGGCTCGGGNCGCCGGCCNCGGNTGCGNCGTAAGTTNTACTGGNACG
NNNCGGNAGCGTTTNTCGTCCGAGCGGCNTNACCGGNAGGCCNNCGGNCG
GTGTCGCGGCNAGNAGNTAGGAGAGGCGANTNNAGGNCGTAGTTGTGCGG
CG

NCCAATGACAANGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCTGAACATCTGGCCAGAAGGCA
AACAAGACAGGNNCCTGAAAGGAAGGAATGCGGAACTATGCCTCCCTAAC
TAGGCATGATATGCACTTAAGGCGCGGCCGTGAGCTCTGGAGGGGGTGGG
TAAAAGTGGGTGCACCTTGATGCACAAACCCAAACCCAAAATGAAAAACC
CAAACCCAAAAATGGAAAAAAAGGGGAAAAAAAAACAAAAGTGGAAGTGG
GGAGAAAAGTTTTATCCCAAAACCCCTATAAAAAAAGGGCCATGCCCCCG
GGGGCGGCCCAACCCCTCAAAACCCAAACATCNAAAAAAAAAAACACAAA
AATAAAAAAAATACCCCCACACAAAAAAAAACACAACAAAACAACACACT
AACAAAAAAAAAAAAAAAACAAAAAAAAATAAAAACAACACCNAAACAAC
AACTACACACACACACAAACAAAAAACAAAATAAACAACAAACAATNAAA
AAACCAACAAACACTCCACAAACACCACACACTTAAACACCACCCCAACA
AAAAACCACCCCCTCATCAAACAAAACCACAACAACACAAAACAAAAACC
ACTATACTCAACACAACACACACAAACCAAAACACACCTAAAATACAATA
AATAACAAAAACACACCACACCTTCCTACTAATTATAAATCAATTACCAA
CCACACAAACTCACCACAAAATATAGACTTTTTATTTTATTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_e23.b1 MSMg01no364_e23.b1 CHROMAT_FILE:
MSMg01no364_e23.b1 PHD_FILE: MSMg01no364_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:22 2005
         (386 letters)



>mm_chr7_28980568_28981350
          Length = 783

 Score =  685 bits (354), Expect = 0.0
 Identities = 373/382 (97%), Gaps = 6/382 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtccagtctggatctatagagagagttccagggcacctgggcgctacacagt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcaggtccagcctggatctatagagagagttccagggcacctgggcgctacacagt 267

                                                                       
Query: 65  gagacctgtctgaaaaaaaaagagagagagaaggcaaggctggggagcccagctttacct 124
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 268 gagacctgtctgaaaaaaaaa---agagagaaggcaaggctggggagcccagctttacct 324

                                                                       
Query: 125 cagactcactgtagtttgaccttgacccctgactctcctgcttccacctcccagcctgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagactcactgtagtttgaccttgacccctgactctcctgcttccacctcccagcctgct 384

                                                                       
Query: 185 gggtctccaggcctgcgcctatgaccaggctcaagcctttttcagatagaaaggcaggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggtctccaggcctgcgcctatgaccaggctcaagcctttttcagatagaaaggcaggca 444

                                                                       
Query: 245 tcctgggcctctgggtgtgcctttaaccactttcttccttggagttctggtttttttttt 304
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 tcctgggcctctgggcgtgcctttaaccactttcttccttggagctctggtttttttttt 504

                                                                       
Query: 305 ttttgacttctccctttaggaagagcttcagtgccttccttcaccagcggctaaaacttt 364
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 t---gacttctccctttaggaagagcttcagtgccttccttcaccagcggctaaaacttt 561

                                 
Query: 365 cctttgtcttcagttgtcctga 386
           ||||||||||||||||||||||
Sbjct: 562 cctttgtcttcagttgtcctga 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 783
Length adjustment: 9
Effective length of query: 377
Effective length of database: 774
Effective search space:   291798
Effective search space used:   291798
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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