BAC Information

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BAC

Clone NameMSMg01-364O21
Chromosome7 (Build37)
Map Location 97,209,777 - 97,210,165
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik
Downstream geneEG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364O21.T7 (MSMg01no364_o21.b1)MSMg01-364O21.TJ (MSMg01no364_o21.g1)
ACCAG473008AG473009
length1,265765
length of high quality
(start - end)
---389 (82 - 470)
definitionCHROMAT_FILE: MSMg01no364_o21.b1 PHD_FILE: MSMg01no364_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:15 2005CHROMAT_FILE: MSMg01no364_o21.g1 PHD_FILE: MSMg01no364_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCGAGGAGCGTGGTCGCCGCTGGGGCTGTGATCTTGTGTGGTGTGN
ATANATATATTACTCCACGATTATTACATCGTATATATAAGCAACCATCC
ATTGCACTCTTCGCATCGACGGTCGTCGAGGCTGCATGCGGCGGGCCGGC
GTGGTGTGGCCGGCGGAGTGCATTCGTGACGGCCGGTCTGTTGTGTGAGG
CGTCATTCGTTTCTGCTTTGTTTCTGAGTGATTGTCTTATATTTGGTATG
TTGCTCTCCTCTGCCCGACCGTCTTACATCGTGCGCTCATAGCCATATAC
TATCGAACCTTCAGTGGTGCCGTGTGAGCGTTCGGCCTGATGACGTGGTG
CGTTTATGCGTATGCGCTGTCGCGTCGGTCAGCCGAACGTAGTCTCTGAG
CCTATGACCACCCCTACCACGTAACGTCAATAACACCTCGTCTAGCGTCT
TCCTTTTCCTACCATATCAATCCCAATACTAATTTTCACCGTATCTTCTT
CGTTCCACCCTGTGCTGCTGGAGAGCCGCTATGTGTACTCCGGCGATGAC
AACCGGAATGTGCGAGATGAGGCGCTGACGGAGTGTCGGTCAACTAGGAA
GCATTGAGCTAGTTGATATCGAGATCTCGCAGCTCGCATCGTATCGTCTT
GATTTACTATATCGTTNCGTGCCTCCGTGCATACCCGTCACGCAACCGTA
AGTCGACGAATATCGGCCCGTGCGTGACCGTCCTTATCGGCTGTAAATTT
ATCCTCCGCGGATATTATCTGTTGCCACGCATGGTACGTATCATCTGACT
TGTCGTGGTATCATCATACGTTCGTATACCGCTATGGGCACGCCTGCTAC
CAACGCGTGATAGTTAGTATTCATACACGCGACAGTGATGCGAAATGAAA
TTGTCGGTTCCCCGGCCTGTCTATACTGATAGCGTATTGACGACCACATC
GCCGTGGTAGGCCTTCGTATATGCGCTCTTGTGTCGTTGCGGTCCGAGCG
ATTATCGAGTGCCATATCGATATATCGCTGTACGTGGAGATAGATCTTGT
CTTGTATCACGCATAGAATAGGCCCCACGCTCTCATTCGCTCGCGTTCCA
TAGAGTGTCTGTGTAAGACCGCCCCGGCGTATTCCTATCTACCTCCGCTA
TCTATGATTCACGCTATTATGTATTTTCCAATCCATGCGTCCATCAGCGT
ATCGTCATACAGTGTTGCCACGTCGTGCTGTCGCAGTGCTAATATAGTGG
TTTATTAATCGCGTN
TAATATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCAGCCTCTCTCTAAA
GCAGTACTACTGAAATGTTAGTGTGCCTTTGGTTCACCCTGATGCTTATT
AAAATGCAGCCTTTGGGGATGCTCGTGCCAATGGTGCGTACAGCTTTGAG
GGCAAGTACTAAAGAATTTAGGACATTTTTCAACCCATTCTCATCTCTCT
GGGAACCTCCAGTTGCAATGACTTCTTTCTTTCTTTTTGTTTGTCTTTGG
TTTGGGTTAAAATACCAAATAGTAAAAAACTTCTAAGAAAGTCAGCTGAG
CAAGAATAAGGTACAGTTCAAGAGTGAGATAGGAAATAGAAGTAGGAATG
GGAAGAGGCCTCTGCTATACAGAGGTCACAAACAGTTTGGGGTTGTATGG
AGGAAAAACCCAAAAGTATTGTCTGAGGACTTGATTTCAACCCTATAAAT
CACAGGCTCTTGGGTCCATCATTTTCCCTGGTTCAGATTCGTTTTCTTAT
CAAATCCATCTCCTTAGCTTCTAAAATCTTTTTCACTCTCGATGCACTTG
CAGCCATCTAACAAAAAATCTTTTTTTGCCTTTTCCTCAACCTGTAATGT
ATGTCTCTCCCCTCCTCTCGTATCTTTAATCGATAAGTCTGTTAACTCTT
CCTTTTCTACTACATCTAAAACAATATTTGTCTATTTATTTTTTACTCTT
CTCGTTTACTAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_o21.g1 MSMg01no364_o21.g1 CHROMAT_FILE:
MSMg01no364_o21.g1 PHD_FILE: MSMg01no364_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:15 2005
         (389 letters)



>mm_chr7_97209577_97210365
          Length = 789

 Score =  752 bits (389), Expect = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcccagcctctctctaaagcagtactactgaaatgttagtgtgcctttggttcaccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agcccagcctctctctaaagcagtactactgaaatgttagtgtgcctttggttcaccctg 530

                                                                       
Query: 61  atgcttattaaaatgcagcctttggggatgctcgtgccaatggtgcgtacagctttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 atgcttattaaaatgcagcctttggggatgctcgtgccaatggtgcgtacagctttgagg 470

                                                                       
Query: 121 gcaagtactaaagaatttaggacatttttcaacccattctcatctctctgggaacctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gcaagtactaaagaatttaggacatttttcaacccattctcatctctctgggaacctcca 410

                                                                       
Query: 181 gttgcaatgacttctttctttctttttgtttgtctttggtttgggttaaaataccaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttgcaatgacttctttctttctttttgtttgtctttggtttgggttaaaataccaaata 350

                                                                       
Query: 241 gtaaaaaacttctaagaaagtcagctgagcaagaataaggtacagttcaagagtgagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtaaaaaacttctaagaaagtcagctgagcaagaataaggtacagttcaagagtgagata 290

                                                                       
Query: 301 ggaaatagaagtaggaatgggaagaggcctctgctatacagaggtcacaaacagtttggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggaaatagaagtaggaatgggaagaggcctctgctatacagaggtcacaaacagtttggg 230

                                        
Query: 361 gttgtatggaggaaaaacccaaaagtatt 389
           |||||||||||||||||||||||||||||
Sbjct: 229 gttgtatggaggaaaaacccaaaagtatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)