BAC Information

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BAC

Clone NameMSMg01-364P22
Chromosome7 (Build37)
Map Location 110,722,683 - 110,723,067
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616
Downstream geneLOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364P22.T7 (MSMg01no364_p22.b1)MSMg01-364P22.TJ (MSMg01no364_p22.g1)
ACCAG473058AG473059
length1,325769
length of high quality
(start - end)		---385 (83 - 467)
definitionCHROMAT_FILE: MSMg01no364_p22.b1 PHD_FILE: MSMg01no364_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:22 2005CHROMAT_FILE: MSMg01no364_p22.g1 PHD_FILE: MSMg01no364_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTAATTCTATATGCTGATACGTGTGTATGGGCTGGCGGCGAGTAATGG
TCGATATTTCACAGGATGATATGCGTGAGTTCCCTCGCGTGCGGGTCGGA
CCGCGCGGTCCGGAGGCCGTGGGTGTTGAGTTTGGTTGTTGATAGTCATG
TGGTGGTGGGTGAGCGGTGTGGCTCGGGGTTGCGTACGTGTCTGTGGGCG
TGGGCATCGGCAGTGAGCTGTGACCCGGAGAGTGGTCCTCGGTTATGAGT
ATACTGCTTCGTCACGACGCTTTTTTTGTCCTGGTCTTGGACTCTTCTGG
ACGTCTACCTCTACTATGCTGCAAGTCAGTGAGTGTGTTTTGCACTACTC
TGCTCGGATGACTGTGAGTGTCCGGCGATTGTGTCGACGGCGTCGAGTTC
TCTGTGCCGCCTCGTGTTAGGGCGTGTGTGGTGGGGTGCGAGTTGGGCGG
CGTCATGGGTGCGACGCGTTATACTGCGCGATGTTATTTCGCGTCCATGG
ACTGAATAATCGCGTAGTGTAATCGACATGGGATTTATTCGTCTATATGA
GTGTAGCGTACGAGCGAGTTGTGTGATGTCGTTGTAGCGGTGTGGNGTCG
AGGTGTGGTCGTATGTGCTATACCGATGTTTACAGACTTTCATACATAGT
CTACACCAACTAGCGTACAGTCATGAGTGCTCGAGGGTGAAAGTGCGATA
AGTGGGCTGCTGGCGTGGCGTACTTTTATGCTCTCGGGGGTGTGGTCGGA
TGACGTGATGTCGATGTCGCCGTTGCGCTAGGCTTTGCGGCGTTGCTGCT
CTGTCGTGGCGATGTGTGTGTGGTTCACGCGTGTGTCAGTATAGCGGTAG
TGGCGCATCGATAGGTCTAGATGAGTACGGGTTGCTATTCAGCTAATGAT
CGAGTCGGCGGAGGATAGATGAGATGAGGCGATATTGTCAACGGTGGTCG
GGCAGTACAAGGCGTCGAGAAGACCGCTGGTATGTGTGTACGGTGCAGCN
GTCGGTGATGTTTGTCACAAAACTGGTGGCGATGTCGCGTACGTGTATAA
TTATGATGTGGCGTGTCGGTGTGTGTGCGAGAGACTGGATGCGCGTGGTA
TTGTGGCCGCGATGTTTAGCGATCAGATACTGTGGCCATCGCGCGCGTTG
CTGGCGCGGGTTTAAGGGATGATGTGTTTTGTGATGTTCGAGAGTGTCGA
CAACAGTTCACTCGAACTGTGTCGCTGATAGTATGGTGCGACTGCTGGTG
GTGTTATGGNGTCTGATGNGGNGGTCGGTAGCTACGATATGAGCGCGTCT
AGAAACCAGGTGACTGATGATCGTN

NAAAACTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGAAAATAAGGACA
TAATTCCATCAAAGGCCAGATGCAAAGCTAGTCCGTAGAGTGTTGCTCTG
TGAGTGGCAAATGAGGGGCTTAGTTAGAAAACGGTGAGCTGAGTTCCTGC
CTTGTTAAATAATGGTTGTGTGACCTAATCAAGGTGCTTTGCCTGTTCAT
ATCTCATTTTTATAATGTGTTGTATATAAATCATACCAGTAATAATATTT
ATGTTAGTATGATATATTTCATGAGCTTTAAACTACAAAATCATGGGGCA
AAGCTGATTGGGAAAGCCTTAAAATATTTAATTTAACAATATAAACAAAA
ATTATTCTAAGGCATTCTGTGGTTTAAACAGTCTGGACAGTTGATAGTAG
TCACTGCTCTTACCTAGATTACTCACTTGACACACCTTAGAAGTACACCC
AAAGTCTATTCTGTTATTTTTTTCAATTTTTTTAACTAAAGGACCATTTA
TTATAGGACCAAAAATCCACTTCTAGTGCGTTTGGCCCTTTAACTTCGGA
TCTGGGACTGGGTTTTTTTTTTTCTTTTTTTTATCATAACGTAGAATTTG
ACCCCCTTTTAAAATAATTTCTTTTCTTTTTTTTATCCATCGCGCCTGTT
TTTTCTCTCTTCCATCTTCCTTCCCTTCTACATTTCTCATCTCTTTTATC
CTCCGCACTTCCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_p22.g1 MSMg01no364_p22.g1 CHROMAT_FILE:
MSMg01no364_p22.g1 PHD_FILE: MSMg01no364_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:22 2005
         (385 letters)



>mm_chr7_110722483_110723267
          Length = 785

 Score =  706 bits (365), Expect = 0.0
 Identities = 380/385 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaagaaaataaggacataattccatcaaaggccagatgcaaagctagtccgtagagtg 60
           ||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct: 201 tgtaagaaaataaggacataatttcaacaaaggccagatgcaaagctagtctgtagagtg 260

                                                                       
Query: 61  ttgctctgtgagtggcaaatgaggggcttagttagaaaacggtgagctgagttcctgcct 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctttgtgagtggcaaatgaggggcttagttagaaaacggtgagctgagttcctgcct 320

                                                                       
Query: 121 tgttaaataatggttgtgtgacctaatcaaggtgctttgcctgttcatatctcattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttaaataatggttgtgtgacctaatcaaggtgctttgcctgttcatatctcattttta 380

                                                                       
Query: 181 taatgtgttgtatataaatcataccagtaataatatttatgttagtatgatatatttcat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 taatgtgttgtatataaatcataccagtaataacatttatgttagtatgatatatttcat 440

                                                                       
Query: 241 gagctttaaactacaaaatcatggggcaaagctgattgggaaagccttaaaatatttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagctttaaactacaaaatcatggggcaaagctgattgggaaagccttaaaatatttaat 500

                                                                       
Query: 301 ttaacaatataaacaaaaattattctaaggcattctgtggtttaaacagtctggacagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaacaatataaacaaaaattattctaaggcattctgtggtttaaacagtctggacagtt 560

                                    
Query: 361 gatagtagtcactgctcttacctag 385
           |||||||||||||||||||||||||
Sbjct: 561 gatagtagtcactgctcttacctag 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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