BAC Information

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BAC

Clone NameMSMg01-365F19
Chromosome7 (Build37)
Map Location 50,711,822 - 50,847,319
singlet/doubletdoublet
Overlap geneEtfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719
Upstream geneLOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2
Downstream gene4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365F19.T7 (MSMg01no365_f19.b1)MSMg01-365F19.TJ (MSMg01no365_f19.g1)
ACCAG473335AG473336
length772720
length of high quality
(start - end)		442 (57 - 498)514 (59 - 572)
definitionCHROMAT_FILE: MSMg01no365_f19.b1 PHD_FILE: MSMg01no365_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:50 2005CHROMAT_FILE: MSMg01no365_f19.g1 PHD_FILE: MSMg01no365_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,846,878 - 50,847,319)(50,711,822 - 50,712,335)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGT
ACTGCCTGAGCTATATAGTGTGACCCTGTTTCATGTTTAAAAAAACAAAA
CAAAACACATTAAACAAACAAACAAAAAACAATATTGATGTAGTTTTCAA
CAAACTTTTCTATAAAGCCTCAAAACCTTGTAACCTTAACTTTAGAAGGT
CTCAAATAATTAGTCAACATTTCTTCAACATGCAAAGAAACACAGTCCAT
AAAATATCTCCTACAGTACAGGCATTTGTGCTTCTTCCTACAAGTTGATT
ATTTCTCAAACATATAATTATATTTATGTTTAAACAAGCAATGCATAGCT
TTTTTCTTCTAAACTATGGACTATGGCTTGTATAACGTTTGTGTATGTAT
TGTGTGTAGACACCTGTGGCATGTTATGTGTTTGCCTGTGTCCAGAAGAC
AAAGATTTTACCAACTGAGTAGTGTATCTTCTTAGTCTTATTTAGATCTG
TGATAAATAAAATTTCATTAAAACCAAGGGGAATATTTTTGACGAGGGAA
ATGGATGAAGAACTGACTCTACAATAAAATCTTTTACATGATCAGATGAG
TGCCTGGCATGAATGCTTGAGACTATCGAAACAAATTATTTTGGAGGATT
TTCTGTTTTCCAAAATATGGCTCTTCCCCCCAATGCCTTGAATCTGTCCC
CATATTTAAGCAAACATTCTCATTCTTCCCTCAAATATTGTGACCCTCAC
TTATAACTCCCTTTATAATATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTTTCCTCTGATGCTGTCCCCTCCAGGGTACATTCGCCTCT
CAGGTGACACTGGAGGGGGACAAGGTAAAAGTGGAACGGGAAATTGACGG
GGGTCTGGAGACCCTTCGCCTGAAGCTGCCCGCTGTGGTGACTGCTGACC
TAAGGCTCAATGAGCCTCGCTATGCCACCCTGCCCAACATCATGGTGAGT
GGTTGGTGGCAAGCCACTGGGACCTACTGTGGGGAGGACTTGGTGCCTCC
TCAGTGATTGGATGACACAAGACAAGAGCACAAGGGATATAGATCCAAAG
GGAAGGGTCACCTTGCCATCTTCTCCTAGCAATTTCCAGGCTCACCTCTA
CCAGTGGCAAAAGTTAATGGGCTAGTATAGCAAGTGGAGGGCCCACCAGG
GTCACAACTGGTAGGAAGTCTCTCAGACAGCAGAAGTGTTTCTCCCTGTC
TTCCTGGCCAGTAGGAGTTTACTAGATAATTCTGGGCAAATAGCAAGACT
TCATCCAGTCTTGGCTCATGGTCATTTTTGTGAGTTGGAAGTCATTGTTT
AGGACATCTTGGCTGGAGCTAATGTCTCTTGGTCAAAAGGAAGTTGATCT
CCAATCCTCACCGCTAGCTTGATGAAATTCTTCATTAAGCTTTGACAAGA
TGGGGTGTTTAAAGTGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_f19.b1 MSMg01no365_f19.b1 CHROMAT_FILE:
MSMg01no365_f19.b1 PHD_FILE: MSMg01no365_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:50 2005
         (442 letters)



>mm_chr7_50846678_50847519
          Length = 842

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagctatatagtgtgaccctgtttcatgtttaaaaaaacaaaacaaaacacattaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgagctatatagtgtgaccctgtttcatgtttaaaaaaacaaaacaaaacacattaaaca 583

                                                                       
Query: 61  aacaaacaaaaaacaatattgatgtagttttcaacaaacttttctataaagcctcaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aacaaacaaaaaacaatattgatgtagttttcaacaaacttttctataaagcctcaaaac 523

                                                                       
Query: 121 cttgtaaccttaactttagaaggtctcaaataattagtcaacatttcttcaacatgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cttgtaaccttaactttagaaggtctcaaataattagtcaacatttcttcaacatgcaaa 463

                                                                       
Query: 181 gaaacacagtccataaaatatctcctacagtacaggcatttgtgcttcttcctacaagtt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 462 gaaacacagtccataaaatatctcctacagtacaggtatttgtgcttcttcctacaagtt 403

                                                                       
Query: 241 gattatttctcaaacatataattatatttatgtttaaacaagcaatgcatagcttttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gattatttctcaaacatataattatatttatgtttaaacaagcaatgcatagcttttttc 343

                                                                       
Query: 301 ttctaaactatggactatggcttgtataacgtttgtgtatgtattgtgtgtagacacctg 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 342 ttctaaactatggactatggcttgtataaagtttgtgtatgtattgtgtgtagacacctg 283

                                                                       
Query: 361 tggcatgttatgtgtttgcctgtgtccagaagacaaagattttaccaactgagtagtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tggcatgttatgtgtttgcctgtgtccagaagacaaagattttaccaactgagtagtgta 223

                                 
Query: 421 tcttcttagtcttatttagatc 442
           ||||||||||||||||||||||
Sbjct: 222 tcttcttagtcttatttagatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_f19.g1 MSMg01no365_f19.g1 CHROMAT_FILE:
MSMg01no365_f19.g1 PHD_FILE: MSMg01no365_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:50 2005
         (514 letters)



>mm_chr7_50711622_50712535
          Length = 914

 Score =  971 bits (502), Expect = 0.0
 Identities = 511/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttcctctgatgctgtcccctccagggtacattcgcctctcaggtgacactggagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttcctctgatgctgtcccctccagggtacattcgcctctcaggtgacactggagggg 260

                                                                       
Query: 61  gacaaggtaaaagtggaacgggaaattgacgggggtctggagacccttcgcctgaagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaggtaaaagtggaacgggaaattgacgggggtctggagacccttcgcctgaagctg 320

                                                                       
Query: 121 cccgctgtggtgactgctgacctaaggctcaatgagcctcgctatgccaccctgcccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccgctgtggtgactgctgacctaaggctcaatgagcctcgctatgccaccctgcccaac 380

                                                                       
Query: 181 atcatggtgagtggttggtggcaagccactgggacctactgtggggaggacttggtgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcatggtgagtggttggtggcaagccactgggacctactgtggggaggacttggtgcct 440

                                                                       
Query: 241 cctcagtgattggatgacacaagacaagagcacaagggatatagatccaaagggaagggt 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 441 cctcagtgattggatgacacaagacaagagcacaagggatatagacccaaaggaaagggt 500

                                                                       
Query: 301 caccttgccatcttctcctagcaatttccaggctcacctctaccagtggcaaaagttaat 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccttgccatcttcccctagcaatttccaggctcacctctaccagtggcaaaagttaat 560

                                                                       
Query: 361 gggctagtatagcaagtggagggcccaccagggtcacaactggtaggaagtctctcagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggctagtatagcaagtggagggcccaccagggtcacaactggtaggaagtctctcagac 620

                                                                       
Query: 421 agcagaagtgtttctccctgtcttcctggccagtaggagtttactagataattctgggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcagaagtgtttctccctgtcttcctggccagtaggagtttactagataattctgggca 680

                                             
Query: 481 aatagcaagacttcatccagtcttggctcatggt 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 aatagcaagacttcatccagtcttggctcatggt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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