BAC Information

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BAC

Clone NameMSMg01-365L20
Chromosome7 (Build37)
Map Location 38,155,753 - 38,345,375
singlet/doubletdoublet
Overlap geneZfp536
Upstream geneTshz3, LOC100043874
Downstream geneLOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365L20.T7 (MSMg01no365_l20.b1)MSMg01-365L20.TJ (MSMg01no365_l20.g1)
ACCAG473623AG473624
length778720
length of high quality
(start - end)
350 (57 - 406)452 (50 - 501)
definitionCHROMAT_FILE: MSMg01no365_l20.b1 PHD_FILE: MSMg01no365_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:19 2005CHROMAT_FILE: MSMg01no365_l20.g1 PHD_FILE: MSMg01no365_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,345,026 - 38,345,375)(38,155,753 - 38,156,204)
sequence
GTGGTCGCTAAACGACTCACTATTTCGAGAGGATCCGCGGAATTCAGTGG
CTTGCCTCATGACAAATAGGGTCAAAGTATACAGATTTGATACCACTCTT
GACCCGATTTGCATCTTCAAAGGAAACACTAGTGTCCTAAAGCAATGAGT
GTCTAAACTTTGTCTGTAGCTACCTGGTGGGTGGCTGGGGCTTCACCAGG
AGCTGTGCTGAAATCAAGGGGAGCTGTCTGGGTGCAATTCAGCTGGCATT
CTGTTTGCATTTTCCTTACCAAGAGAAAGTGAGGCTTTAGCTTCTTGTGG
GACCCTTGGTTTTCTTGTGTGACATGTGACATGTGTCTGAGAGAAGTGAG
AGACACAGCACAAGCTGACTCCTTGGCTCTGCTGCCCACCACTACACGTG
GCAGGGGTGGGGCAGGTGGGAGGGGCTTCCCCCTGAAGATGAATAGCCCT
GTAGAATAGAGTGCTCTCTCCAGTGATCGTTCTAACGAAGTGCGACTTTG
TTTGTCCCTGCTTATACCACTTTTTCCCATTTTTCTCCCGATCCGCTTTT
TTCTTCTCATTCCTTGTCATCTCTTGCCTCCGTTCTGATATTCCCCGCTT
TCTTTGCCCCATTTCTACTCCCTCTTCCCTCACCTTTTTTTTTCTCCCCT
TTCCTTTCCCTTTCCCCTTCCTTCTTTACTTTTCCTTTTTATTCCCCCCC
CCCTTTCTTTTCCTCTTTTTATTCTATTTCACCTTTTCCCCCTTTCCTCC
CTCCTATGTCCCTTTCCCCCTTTCTTTC
GCCTGGTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TTCCTCTGTCCAGGGCATTCCATGTTTTCTTTTTTTTTTCTCCCAGAAGA
CACAGAAACCTGGATATATAAGTTAAAGAACACAACACTTCAGGCTGTTT
GCAACTAATTGAAAACAAAAGTGTAAATATGGCATGGGCCAAAGGAAACA
CATCTGTGTGCCGAAGGCAGCCAGCAGGCCACCGGTGGGCTCCTGGTGTC
CTCTTGGAGCCTTGGAGGGGCTTCGCTCAGCTTTTCCCACCTCATACGGA
GGAGCAGCAAGGAGAAGCTGTAGCTAAGGTTTATGGACAGCAAACCTGGG
CAGGACTCGGAAGGCAACGTGAACCAAGGAAGCTTGGGCTCTTCCCAGCC
CTACCGAGGGCGCCTGTGTTTTGTAAGATCCAGAGACTCGTGTGCACGCT
AGGCTTGGCAAACACTTGTATAAGGCTGGTGCTTGCCTAAGCCCGAAAGA
GACTGTTCAGTTAAGAGCTCACTCAACCCGGATCAGAGAAGAGACACAAA
CTGTTTTCCCAGAAAGATGTTTCCTTGCAACTTCCTCCCTGAAGGAGATT
TTCCATCCCCAAACCTTTCGAGGAGGAATGTCAACCCCCCCCCCCCCCAA
AGTTTAGGTTCCCATATTCTAACTTAATCTTTATTTATTCCTATTAAAAA
AATTATCTTCCTGAATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_l20.b1 MSMg01no365_l20.b1 CHROMAT_FILE:
MSMg01no365_l20.b1 PHD_FILE: MSMg01no365_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:19 2005
         (350 letters)



>mm_chr7_38344826_38345575
          Length = 750

 Score =  646 bits (334), Expect = 0.0
 Identities = 346/350 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgacaaatagggtcaaagtatacagatttgataccactcttgacccgatttgcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcatgacaaatagggtcaaagtatacagatttgataccactcttgacccgatttgcatct 491

                                                                       
Query: 61  tcaaaggaaacactagtgtcctaaagcaatgagtgtctaaactttgtctgtagctacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tcaaaggaaacactagtgtcctaaagcaatgagtgtctaaactttgtctgtagctacctg 431

                                                                       
Query: 121 gtgggtggctggggcttcaccaggagctgtgctgaaatcaaggggagctgtctgggtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtgggtggctggggcttcaccaggagctgtgctgaaatcaaggggagctgtctgggtgca 371

                                                                       
Query: 181 attcagctggcattctgtttgcattttccttaccaagagaaagtgaggctttagcttctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 370 attcagctggcattctgtttgcattttccttaccaagagaaagtgagggtttagcttctt 311

                                                                       
Query: 241 gtgggacccttggttttcttgtgtgacatgtgacatgtgtctgagagaagtgagagacac 300
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtgggacccttggggctcttgtgtgacatgtgacatgtgtctgagagaagtgagagacac 251

                                                             
Query: 301 agcacaagctgactccttggctctgctgcccaccactacacgtggcaggg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agcacaagctgactccttggctctgctgcccaccactacacgtggcaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no365_l20.g1 MSMg01no365_l20.g1 CHROMAT_FILE:
MSMg01no365_l20.g1 PHD_FILE: MSMg01no365_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:19 2005
         (452 letters)



>mm_chr7_38155553_38156404
          Length = 852

 Score =  874 bits (452), Expect = 0.0
 Identities = 452/452 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctctgtccagggcattccatgttttcttttttttttctcccagaagacacagaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctctgtccagggcattccatgttttcttttttttttctcccagaagacacagaaac 260

                                                                       
Query: 61  ctggatatataagttaaagaacacaacacttcaggctgtttgcaactaattgaaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggatatataagttaaagaacacaacacttcaggctgtttgcaactaattgaaaacaaa 320

                                                                       
Query: 121 agtgtaaatatggcatgggccaaaggaaacacatctgtgtgccgaaggcagccagcaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtaaatatggcatgggccaaaggaaacacatctgtgtgccgaaggcagccagcaggc 380

                                                                       
Query: 181 caccggtgggctcctggtgtcctcttggagccttggaggggcttcgctcagcttttccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccggtgggctcctggtgtcctcttggagccttggaggggcttcgctcagcttttccca 440

                                                                       
Query: 241 cctcatacggaggagcagcaaggagaagctgtagctaaggtttatggacagcaaacctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcatacggaggagcagcaaggagaagctgtagctaaggtttatggacagcaaacctgg 500

                                                                       
Query: 301 gcaggactcggaaggcaacgtgaaccaaggaagcttgggctcttcccagccctaccgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggactcggaaggcaacgtgaaccaaggaagcttgggctcttcccagccctaccgagg 560

                                                                       
Query: 361 gcgcctgtgttttgtaagatccagagactcgtgtgcacgctaggcttggcaaacacttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgcctgtgttttgtaagatccagagactcgtgtgcacgctaggcttggcaaacacttgt 620

                                           
Query: 421 ataaggctggtgcttgcctaagcccgaaagag 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 ataaggctggtgcttgcctaagcccgaaagag 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)