BAC Information

Click to search

BAC

Clone NameMSMg01-365N12
Chromosome7 (Build37)
Map Location 68,950,138 - 68,950,492
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365N12.T7 (MSMg01no365_n12.b1)MSMg01-365N12.TJ (MSMg01no365_n12.g1)
ACCAG473701AG473702
length754734
length of high quality
(start - end)
349 (64 - 412)238 (57 - 294)
definitionCHROMAT_FILE: MSMg01no365_n12.b1 PHD_FILE: MSMg01no365_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:27 2005CHROMAT_FILE: MSMg01no365_n12.g1 PHD_FILE: MSMg01no365_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCATCTCCCGATGGAACAAAAAAAAATCAAAGTCGGCATCATAGAAAA
TAAAGAATATGCAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATATAGATATATACATACACACACACATACACAC
ACACACACACATGCATATTGGATAGAGTCCTTAGGAAGGATAGGTAAGCA
TTAAGAACTACTGAGCCCTAACTTTCCAAACCTCCCACACAAGCTAGAAG
ATCCTCTTTGCTTCTTGTTGTTTTAATAACAGTTTTCCTAGTACATAGTT
CTAATTATTAAAAATGAACATGAACTTACATGTTTGAGACATTTTAAAGA
TATAAACACCCCCCCGCGGAAGTGGTTAAGTCTATTTTACACAACTAATA
TTTATTTCCTCTTGGACTGATGGTTCTAGAGCTTCATAGACCACCTAGTC
CATTCGGCATCCTATCCTTATTCCTACCATCGAGCCATTCCCTATACTCC
CCCCACTTCTCTTCTCACCATTTGCTGTCCCCTTTCTATTTAAACTTGGT
TCACCCTCATAACTCGATGCTTTTGTCTTACCTTTCTTACCGTTCCCTTC
TCTCTTCTCGTCCCTATTTTCCCCCTCCCACTTTCCATGGCCCTTATCTC
CTTCTTCCCCTTTGCCCCTTTCCCTCCCTCTTCTTTCTTACCCCCCTTTT
TTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTAAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGTTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGTTTTT
TTGTTCAGGAATAGCATCTAAATATATTAAATATGTTTATTTATTTTTGA
CCAGAATTATTAAAGCAGATATCAATGTGAATATTTTGAATTGGCTTGCT
TTATTTTTCTTGTCCATGGACCATTCTAGAATACTAGTACATATTTATAC
ATAGAATAGAGGATACCACTGTTAAATATTTTTTTCAAAGTTTGTTCCAC
ATTATCAATATCAACAATTTACAAGGTCAATTTCTTAATTTTCAAAGGAT
TACACTGGAGTAAAAATTCTATAATATGTTTTGAAAAATTAAATTTGCAG
AACCCAAACAATGATTAAACTAATTTGATTTTTTTCAACAGAAGTAAGGT
CTGTGAGGAGGAAACTAAAAAGGTTATGTGATAACCGAAACCCTCTCCCA
AATCCCCTTTCCCAAAATAAAAATTTTAAACGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_n12.b1 MSMg01no365_n12.b1 CHROMAT_FILE:
MSMg01no365_n12.b1 PHD_FILE: MSMg01no365_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:27 2005
         (349 letters)



>mm_chr7_68949950_68950698
          Length = 749

 Score =  501 bits (259), Expect = e-146
 Identities = 319/363 (87%), Gaps = 38/363 (10%)
 Strand = Plus / Plus

                                                                       
Query: 11  aaaaatcaaagtcggcatcatagaaaataaagaatatgcagatagatagatagatagata 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaaaatcaaagtcggcatcatagaaaataaagaatatgcagatagatagatagatagata 248

                                                                       
Query: 71  gatagatagatagatagatagatagatagatagatatagatatatacatacacacacaca 130
           |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 249 gatagatagatagatagatagatagatag--------agatatatacatacacacacaca 300

                                                                       
Query: 131 t------------------------------acacacacacacacacatgcatattggat 160
           |                              |||||||||||||||||||||||||||||
Sbjct: 301 tacacacacacacacacacacacacacacacacacacacacacacacatgcatattggat 360

                                                                       
Query: 161 agagtccttaggaaggataggtaagcattaagaactactgagccctaactttccaaacct 220
           ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 361 agagtccttaggatggatgggtaaacattaagaactactgagccctaactttccaaacct 420

                                                                       
Query: 221 cccacacaagctagaagatcctctttgcttcttgttgttttaataacagttttcctagta 280
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 421 cccacacaagctagaagatcctctttgcttcaagttgttttaataacagttttcctagta 480

                                                                       
Query: 281 catagttctaattattaaaaatgaacatgaacttacatgtttgagacattttaaagatat 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 catagttctaattattaaaaatgaacatgaacttacatgtttgagacattttagagatat 540

              
Query: 341 aaa 343
           |||
Sbjct: 541 aaa 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)