BAC Information

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BAC

Clone NameMSMg01-365O06
Chromosome7 (Build37)
Map Location 97,089,583 - 97,089,755
singlet/doubletsinglet
Overlap genel7Rn6
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81
Downstream geneEed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365O06.T7 (MSMg01no365_o06.b1)MSMg01-365O06.TJ (MSMg01no365_o06.g1)
ACCAG473737AG473738
length7651,012
length of high quality
(start - end)
173 (64 - 236)---
definitionCHROMAT_FILE: MSMg01no365_o06.b1 PHD_FILE: MSMg01no365_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:31 2005CHROMAT_FILE: MSMg01no365_o06.g1 PHD_FILE: MSMg01no365_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:31 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTC
CGCATCTACCGTCCTAATTGAACTCAAGAACCTTCCAGAATTTGCAGGAA
GGAACGTGACCCTCCACTACATAACAACACTGGAACGCATCTGGGCCGGC
GACCTCTGACCCTTCCTTCCTAACTTGCACGCCTCTCCGGAACGAGTACT
TCCGGGTCATTACACCCATTTCCTCCTTCTAAGGTAGTAAGGAGGAGCTG
GCATCGCGCTAAGACTACAAATCTCATAGTGCAGTGCGCCAGTCTCCCAG
AGTGTGATCCGGTTTTATTTTGACTGTTACTACCGATAGTATGTGATTTC
CGTGCCTGTGCGAGTCAAAGTTTCTAAAGGTGGCGCCGTTAGAACACCTT
TCTGACGGCCGCCGCAATATTTTAGGAGAAACAATACGCCTCTTGCCAGA
ATCGCCTCATCCAGTCTCTCCTTTTTTCATTTTCACCGCCATATATATCA
TCCCTGCTTTATACTTCATCTCTACCTGTTCTTGTATAATCCCGTTCTTT
TTTTTGTTCACACCGATTCTTTGTTTCCTACCATTCCCTTTTTTTTACCA
TTTTACTGCTTCCCTTTTTGCCCCCTTTTTTATTCTAATCCCTTCCTCTT
CCCCTTTTCCTCCTCTTTCCTTTTCCTCTCCTTCCTTTTCTTCTTTCTTA
TCTTACCTATTCTTTTTCTTCTCTCCCCCTCCTCCCTTTCGTATTCTGTC
TCCTCTTCCCCCCTC
ACATTTCTAACTATATTCATATTCTAAAATAAGCTTAAAGTGACGGGCAC
AGCTTTATAACAAAACACTGATACAGCAAATTTCCAAAACCTAAAGGGAA
CCTATAAAGTTCTCCGCGTTACCCGTTTATAAGTTGGTTAGTCGTAAGTA
TGCCTTCTTTTTAAGATTAATGGATATATTTTTACACAATGCCCGCCTAT
ATCACCCTCATCATGCTTTCCTATTCGTTTAATATTAAGGCTGTTCCAGT
TCAAGTGCGTTACTTAGCGAGAACCCCAATCCCTTCTAATCTTACACTAT
CTAACGGATTGCGAGTACGCCTACGACTATCGCGCTGATATCATTACAGT
TAATCATCTTCTTGAATGTAACAGCCCCTTTTAATTATTATTTTTGAGAC
GGAGATAAGAATAAACGAATAAGACGAAAAAAGATTAGAATATGAAATGT
GTTTCACGCCAATGATACAACCGATCGTCTTTTTGTGTTCTTATGAGACC
AGTAATAACTTTATAAAAAAACTGTTTTTAATCTGCTACCTCCGCGACTA
AGTATCCACTCGAGCGACCCCGCCGGATATTTCCCTGCCCACTATCCCCC
TCCTTTTGCGGCTCAAGAATCCGGCCTCATTTATTTATTATCTAATCCCG
TTTTTAATAAATGCCCCATAATAGAAATCCCCAAGGTGGTTCCCTTGTTC
GTTTTCCATTTTCCGTGCTTTTTCTAGTACTCGACACAACGATCAAAGAC
AACTAGATGACGGCGATAAGAGCATGTTAACAGCCTGTTTCACCCTCCAG
CAACTTCATTCATCCCCCATATCGTTGTTGGGTTAATTGCTTAGTAGATC
ATCTTCTCAAATATTAAGCCGAGAATAAAGAAATAATAAATACCCGTTGC
ACGAATAGCTATATATATTGTTTCTCCACCTACCCCAATATCTTATACCA
TCCCCAGCGTCACATACATTTATATGCTTTCAATACGACAAGCGCCGATA
TAGAGCACACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_o06.b1 MSMg01no365_o06.b1 CHROMAT_FILE:
MSMg01no365_o06.b1 PHD_FILE: MSMg01no365_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:31 2005
         (173 letters)



>mm_chr7_97089383_97089955
          Length = 573

 Score =  327 bits (169), Expect = 2e-94
 Identities = 172/173 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaattgaactcaagaaccttccagaatttgcaggaaggaacgtgaccctccactacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaattgaactcaagaaccttccagaatttgcaggaaggaacgtgaccctccactacata 260

                                                                       
Query: 61  acaacactggaacgcatctgggccggcgacctctgacccttccttcctaacttgcacgcc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacacaggaacgcatctgggccggcgacctctgacccttccttcctaacttgcacgcc 320

                                                                
Query: 121 tctccggaacgagtacttccgggtcattacacccatttcctccttctaaggta 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccggaacgagtacttccgggtcattacacccatttcctccttctaaggta 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)