BAC Information

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BAC

Clone NameMSMg01-366A03
Chromosome7 (Build37)
Map Location 31,213,832 - 31,214,164
singlet/doubletsinglet
Overlap genenone
Upstream geneSipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069
Downstream geneAplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366A03.T7 (MSMg01no366_a03.b1)MSMg01-366A03.TJ (MSMg01no366_a03.g1)
ACCAG473827AG473828
length761747
length of high quality
(start - end)		511 (46 - 556)517 (77 - 593)
definitionCHROMAT_FILE: MSMg01no366_a03.b1 PHD_FILE: MSMg01no366_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:42 2005CHROMAT_FILE: MSMg01no366_a03.g1 PHD_FILE: MSMg01no366_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCATCAAAAAGTGCGGCCGCTATACGACTCCTATATTTCGAGGATCCG
CGGAATTCAGGATCCTTCTCGCTCCACTGAAGTGGAAACTTCTGGCCTGT
TTGGAAAGTCAGTTATGTCAAATGATGTTTTGCTGGGGCACACAGGTTAA
AGGATGTTTTGCTATAGCAGATCCGTGAAAAGACACGTAATGCAGTATAA
ATACGACCCCACAGACAGTGGAAGACACCCTGAGCACTGGTCTGATTTGC
TCCACTTTGATATTCTTCAGTAACAACACGCATGTATTGGTTCCACTGTC
AGTTGGCAAGCACTGTGGTTTCCTCAGGATTGAACTACAGCTGTTGGTTT
GTGTGTGGTATCTGCCTGCCTAGAGGACTGGTCTGCAGCTGTTGGTTTGT
GTGTGGTGTCTGCCTGCCTAGAGGACTGGTCTGCAGCTGTTGGTTTGTGT
GTGGTGTCTGCCTGCCTAGAGGACTGGTCTGCAGCTGTTGGTTTGTGTGT
GGCGTCTGCCTGCCTAGAGGACTGGTCTGCAGCTGCTGAGCTGTATTTGG
TGTTTGCCTCGGGACTGAACTGTTGACAAAGAAGATTGAGATCGCCCCCT
TAGAATTATTTGCTGAAATGTCCACTTCCCCCATATCCTATTAACTTTTC
CCCTTTACTATTCTCTGCTTGCGTGGTGGCACTATCAGCACCGTTTGTAT
GTTTTCCCAACAATGTTCCGCCCAAATACGGTTTTGTCCTACACCTCCAT
TTTCTCTCAGG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGATTAAAGGCATGTGCCGCCA
TGTCTGCCAACACAGGGCAGAATATTTTTGCACTGGGCCTAGTCCCCAGG
CCCTCCCTGCAAATGCTCTACCACTGAGCCATGCTCCCAGCCCCTCACTG
GGGGATTCTAAGCAAGGACACTACTGCTGAGCCACATTCCTGGCCTGATA
AACTCCCTGGCTTTGAAGTCTTCTCATATCTTTTAATGTGTTTTTTGAGA
CAGGGTCTCACTATGTAAGTAACACTGGCTGCCCTGGAACTATGTAGACC
ACACTGGACTCAAATTCAGAGACATGCTTGCCTCTGCCTCCAAAGAGCTG
GGATCAAAGGTGAGTACCACCAACGATCTGCTGGCCTTCTCATGTTTTCT
GCAGGGATTGGGCACCGGCTGTCTGAAATTACAGTATCAGGAAGGGATGG
CCGTCTCCTAAACAGAAAAGTGCCTTTCCCAGGCATTAGATCTGACAGGC
ACCTTGACCTTTGACTCCTAGCCTTTCTAGCATCCTACTGTGGCCCCTCA
GAGCCGCTCTCCTGAACCAATGCTCCCCCACTCCCCATTTTTAATGACAC
CACACAGTCTGAGGCCAAATTGAGTTTAAACGGTAGCTACAGGGATACAC
AGACCAGGGGGAACAATTCCCGGTGAATGCTAGCGCCAGAAACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_a03.g1 MSMg01no366_a03.g1 CHROMAT_FILE:
MSMg01no366_a03.g1 PHD_FILE: MSMg01no366_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:42 2005
         (517 letters)



>mm_chr7_31213248_31214164
          Length = 917

 Score =  578 bits (299), Expect = e-169
 Identities = 323/333 (96%), Gaps = 4/333 (1%)
 Strand = Plus / Minus

                                                                       
Query: 189 gaagtcttctcatatcttttaatgtgttttttgagacagggtctcactatgtaagtaaca 248
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 917 gaagtcttctcacatcttttaatgtgttttttgagacagggtctcactatgtaaataaca 858

                                                                       
Query: 249 ctggctgccctgga----actatgtagaccacactggactcaaattcagagacatgcttg 304
           ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctggctgccctggaactcactatgtagaccacactggactcaaattcagagacatgcttg 798

                                                                       
Query: 305 cctctgcctccaaagagctgggatcaaaggtgagtaccaccaacgatctgctggccttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cctctgcctccaaagagctgggatcaaaggtgagtaccaccaacgatctgctggccttct 738

                                                                       
Query: 365 catgttttctgcagggattgggcaccggctgtctgaaattacagtatcaggaagggatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 737 catgttttctgcagggattgggcaccggctgtctgaaattacagtatcaggaaggaatgg 678

                                                                       
Query: 425 ccgtctcctaaacagaaaagtgcctttcccaggcattagatctgacaggcaccttgacct 484
           || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 677 ccatctcctaaacagaaaagtgcctttcccaggcatcagatctgacaggcaccttgacct 618

                                            
Query: 485 ttgactcctagcctttctagcatcctactgtgg 517
           ||||||||||||||||||| |||||||||||||
Sbjct: 617 ttgactcctagcctttctatcatcctactgtgg 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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