BAC Information

Click to search

BAC

Clone NameMSMg01-366D06
Chromosome7 (Build37)
Map Location 92,782,792 - 92,783,213
singlet/doubletsinglet
Overlap genenone
Upstream geneZfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445
Downstream geneVmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366D06.T7 (MSMg01no366_d06.b1)MSMg01-366D06.TJ (MSMg01no366_d06.g1)
ACCAG473973AG473974
length740747
length of high quality
(start - end)		524 (51 - 574)460 (81 - 540)
definitionCHROMAT_FILE: MSMg01no366_d06.b1 PHD_FILE: MSMg01no366_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:58 2005CHROMAT_FILE: MSMg01no366_d06.g1 PHD_FILE: MSMg01no366_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAACCTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAGC
AAACCAATAGCCAACATCAAAGTAAATGGTGAGAAGCTGAAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTGTCCACTCTCGCCCTACCTATTCA
ACATAGTACTTGAAGTATTAGCCAGAGCAATTAGACAACAAAAGGAGATC
AAGGGGATTCAAATTGGAAAGGAAGAAGTTAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGTCCCTATAAATTCCACCAGAGAACTCC
TAAGCCTGAAAAACAGCTTCAATGAAATACCTGGATATAAAATTAACTCA
AACAAGTCAATGGCCTTTCTGTACACAAAGGATAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACC
TTGGCATGACTCTAACTAAGGAAGTGAAATATCTGTATGATAAGAACTTC
AAGTCTCTAAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCT
CGTGTGCTAATGGATTGCCAGGATCAACATTGTGTAAATGGCTATCTTGC
CAAAAGCAATCTACAGATTCCATGCCATCCGCATCAAATTTCAACTCTAT
TCTTTCACGAATTAGAAGGGGTATCGCTGATTCTTATGGG

NNNCCTCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCGGCGAGATACTAGCT
TGGGCAAGATATTCTTCCGTAGTGTCTGAAGAACAATTTAGTAGGTATAG
ATGCCACTCAGGGAAAAATGAATCCGAAATTTTGTGTTTTAATTGCAGTT
CACTGCTCAATGTGAAACTATGTTCACAATAGTGTTAAATAAATGGATAA
TTCACCAGGGACCATGAGACCAGTATGGAATCACAGTGGCTTTTCTAAGC
CCTTTCATGCATCAAGATCTCTATAATGTTGCAAGGACATTGGTTGATAT
AAGTGATCATAGAAAATGGGGGAATAGGTCTTTTTCTGTTACTGGAAGTT
TAATGGGAGAAGATTTGTGTCATCATGGAGTTCCTAAGGAGAAATATGAT
TTTAAAAAGTCTAATTTTGTGCTGCAAAGCTTCTAAGGAACATTTCAATT
CCTGGGAAATAATTCTCATTTGATATCCATAATAGACGATCTAAGGTAAA
ATTAATAAAGTCTTTTCAGGACTTGGGTAATTTCCTCCCTGCCCAGTATA
AAAAGGTAATATTTCCTTTCCAAAATAAGGTTATAATACCCAGTGGAGAT
ACTTTTGCCCAGGCACGCTTGTATGAAAAAAGTACCAATAGATTCCGGAA
CCAATGCTTTTTCCTTTGGCACTCCGGATCCCGGTTATGGAGACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_d06.g1 MSMg01no366_d06.g1 CHROMAT_FILE:
MSMg01no366_d06.g1 PHD_FILE: MSMg01no366_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:59 2005
         (460 letters)



>mm_chr7_92782562_92783417
          Length = 856

 Score =  398 bits (206), Expect = e-115
 Identities = 372/436 (85%), Gaps = 24/436 (5%)
 Strand = Plus / Plus

                                                                       
Query: 31  attcttccgtagtgtctgaagaac-aatttagtaggtatagatgccactcagggaaaaat 89
           |||||||  ||||| |||||| ||  |||||| ||||||||||| |||||||||||||||
Sbjct: 231 attcttcattagtggctgaag-actcatttaggaggtatagatgtcactcagggaaaaat 289

                                                                       
Query: 90  gaatccgaaattttgtgttttaattg--cagttcactgctcaatgtgaaactatgttcac 147
           ||||| |  ||||||||||| ||  |  ||||| |||||||| ||||||||  |||||||
Sbjct: 290 gaatcaggcattttgtgtttgaa--gcacagtt-actgctcagtgtgaaac--tgttcac 344

                                                                       
Query: 148 aatagtgttaaataaatggataattcaccagggaccatgagaccagtatggaatcacagt 207
           ||||||||||||||||||||||||||||||||||||| |||  || |||||||| |||||
Sbjct: 345 aatagtgttaaataaatggataattcaccagggaccaagag-gcaatatggaattacagt 403

                                                                       
Query: 208 ggcttttctaagccctttcatgcatcaagatctctataatgttgcaagg----acattgg 263
           | |||||||||||||||||||||| |||||||||||||||||    |||    | |||| 
Sbjct: 404 gacttttctaagccctttcatgcaccaagatctctataatgt----aggaaaaaaattgc 459

                                                                       
Query: 264 ttgatataagtgatcatagaaaatgggggaataggtctt---tttctgttactggaagtt 320
           ||||| |||||||||||| ||||||||| ||||   |||   ||| ||||| ||||| | 
Sbjct: 460 ttgatctaagtgatcataaaaaatggggaaata---cttccatttatgttaatggaaatc 516

                                                                       
Query: 321 taatgggagaagatttgtgtcatcatggagttcctaaggagaaatatgattttaaaaagt 380
           ||| | ||||| |||||||||| ||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 517 taaagagagaacatttgtgtcaacatggggtttctaagaagaaaaatgattttaaaaagt 576

                                                                       
Query: 381 ctaattttgtgctgcaaagcttctaaggaacatttcaattcctgggaaataattctcatt 440
           ||||||| ||||||  |||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 577 ctaatttagtgctgtgaagcttctaaggaacatttcaattcctgggaaataattcttatg 636

                           
Query: 441 tgatatccataataga 456
           |||||| |||||||||
Sbjct: 637 tgatattcataataga 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 856
Length adjustment: 10
Effective length of query: 450
Effective length of database: 846
Effective search space:   380700
Effective search space used:   380700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |