BAC Information

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BAC

Clone NameMSMg01-366D17
Chromosome7 (Build37)
Map Location 93,118,539 - 93,119,015
singlet/doubletsinglet
Overlap geneEG546980
Upstream geneF830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928
Downstream geneLOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366D17.T7 (MSMg01no366_d17.b1)MSMg01-366D17.TJ (MSMg01no366_d17.g1)
ACCAG473995AG473996
length751755
length of high quality
(start - end)		510 (54 - 563)477 (83 - 559)
definitionCHROMAT_FILE: MSMg01no366_d17.b1 PHD_FILE: MSMg01no366_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:01 2005CHROMAT_FILE: MSMg01no366_d17.g1 PHD_FILE: MSMg01no366_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAACTGATGCATACTGAATGGCTGAGAAGTATCTGA
AAAAATGTTGAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGTAGATGC
TGCAGAGGATAGGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTA
CAAACTTGTACAACCATTCTAGAAATTAGTTTGGTAGTTCCTCAGAAAAT
TGGACATAGTACTACCGAATGATCCAGCAATACCTCTCCTGGGCAAATAT
CCAGAACATGTTCCAAATGGTAATAAGGGCACATGCTCCACTATGTTCAT
TGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCT
CAACAGAGGAATAGACACAGAAAATGTGGTACATTTACACAATGGAGTCC
TACTCAGCTATTTAAAACAATGAATTTATGAAATTCTTGGGCAAATGGAT
GTATCTGTAGGATATCAACCTTAGTGAGGTAACCCAATCACAAAAATGTC
ACTTGATATGTACTCTCTGATGAGGGNAATTAGCCCAGAAATTANAATAC
CCAGATTCATTTTGCGAACCCCGAAAAATCCGAAGGAGACCATGTTTGCG
AACTTCCTTCCTTTTAGATTAGGAAAAAACACCCTGGGAGGAGTTACGAA
A

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAGGACATTGTGAC
AAAAATAACACACAGTAAAATTCCAGGCATGGTGATATCCAGTTGCAGAT
ATCTTTGGAAAATTGTTAGTCGATATATGTCTATATTCCCCATCAAAAGA
AAGACTTATCAGTTTAGTTCTGTAACTTTACAGAATACAATAATATTAAG
GATGTGATGTGGACTAAGTTTAAAAATCTTTTCACATAATCTTGGGATTT
GTTCAGTTACAAAACTCTGCTTGGATACATGCAATATACATATCTATTAC
CTCCAGATAGGGAACTCCAAAAAAAAAAAAAGTCCAATTTTATGAACCAG
GAAGTTCACAAAACTTTTATTAGTTTTGCTTACCAAATTATTAGTAAGCA
ATTACTTACAGGATCAGAAAAGATTCATAGCATAATACCCCAGCCTGAAT
AAAACCACACAAACCTGGGAATCTTAAATACATTGCACAACCTCCAGTGC
ACAAAAATTTTAGAGAAAGCATGTCCTATGCAAGTGACTCTTTGTTTAAT
AGCTTCCAGGAAGATCTGTGTGGTTCTCCTTCTTTGAGAAAACCGGATGG
CCTTAGAAACTTCTTTGAATCTCTTCTTCCCGAAAAAGTTGTTTTCAGAA
CCTTAAAATTGGTAAGTTTCCCCCCGGCAAAGGATGGAAAAGGGTTTATC
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_d17.g1 MSMg01no366_d17.g1 CHROMAT_FILE:
MSMg01no366_d17.g1 PHD_FILE: MSMg01no366_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:01 2005
         (477 letters)



>mm_chr7_93118339_93119218
          Length = 880

 Score =  816 bits (422), Expect = 0.0
 Identities = 465/482 (96%), Gaps = 10/482 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaggacattgtgacaaaaataacacacagtaaaattccaggcatggtgatatccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaggacattgtgacaaaaataacacacagtaaaattccaggcatggtgatatccag 260

                                                                       
Query: 61  ttgcagat---atctttggaaaattgttagtcgatatatgtctatattccccatcaaaag 117
           ||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttgcagatgatatctttggaaaattgttagtcgatatatgtctatattccccatcataag 320

                                                                       
Query: 118 aaagacttatcagtttagttctgtaactttacagaatacaataatattaaggatgtgatg 177
           ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 321 aaagactaatcagtttagttctgtaactttacagaatacag-aatattaaggatgtgatg 379

                                                                       
Query: 178 tggac-taagtttaaaaatcttttcacataatcttgggatttgttcagttacaaaactct 236
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggacataagtttaaaaatcttttcacataatcttgggatttgttcagttacaaaactct 439

                                                                       
Query: 237 gcttggatacatgcaatatacatatctattacctccagatagggaactccaaaaaaaaaa 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcttggatacatgcaatatacatatctattacctccagatagggaactccaaaaaaaaaa 499

                                                                       
Query: 297 aaagtccaattttatgaaccaggaagttcacaaaacttttattagttttgcttacca-aa 355
              |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct: 500 ---gtccaattttatgaaccaggaagttcccaaaacttttattagttttgcttatcagaa 556

                                                                       
Query: 356 ttattagtaagcaattacttacaggatcagaaaagattcatagcataataccccagcctg 415
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 557 t-attagtaagcaattacttacaggatcagaaaagattcatagcataataccccagcatg 615

                                                                       
Query: 416 aataaaaccacacaaacctgggaatcttaaatacattgcacaacctccagtgcacaaaaa 475
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 616 aataaaaccacacaaacctgggaatcttaaatacattgaacaacctccagtgcacaaaaa 675

             
Query: 476 tt 477
           ||
Sbjct: 676 tt 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 880
Length adjustment: 10
Effective length of query: 467
Effective length of database: 870
Effective search space:   406290
Effective search space used:   406290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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