BAC Information

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BAC

Clone NameMSMg01-366M23
Chromosome7 (Build37)
Map Location 146,839,750 - 146,839,994
singlet/doubletsinglet
Overlap gene9330101J02Rik
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik
Downstream geneLOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366M23.T7 (MSMg01no366_m23.b1)MSMg01-366M23.TJ (MSMg01no366_m23.g1)
ACCAG474434AG474435
length768721
length of high quality
(start - end)
245 (78 - 322)---
definitionCHROMAT_FILE: MSMg01no366_m23.b1 PHD_FILE: MSMg01no366_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:45 2005CHROMAT_FILE: MSMg01no366_m23.g1 PHD_FILE: MSMg01no366_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTCTCTAAATTGCGGCGCTAAACGACTCCTATAGTCAGAGAACCGC
GGAATTCCTTCCGGTTCACCAAAGTGGTGAGCGGCTTCATTGCCCACTCT
AGGTACCAACCACCTAGCAAACGATATGCACCCAAGGCTCTCACAACTAC
AGAAAGACTAGGAGCCAGGAGGTGAAGGCAGCTACAGGCATGGCAGGAGG
CAGCATGGGTGAGCGCTTACTTAGGTCAGCGCTCCTCCTCAAACCAGGGA
GCTATGAGAAGGGCCTGTGAGACTCATAGCATGAGAGGAGCTGTGCGAGG
GAGCTGCTGGTACCTGGATAGGACCTCTCTAGGCCCAGGTGTGATAAGAG
GCATCTGGGGACATGTGTGAGCAGAGCAGCAACAAGACGGTCCCTCTAGG
GCCTGAATTCCTGGCCTGCACAGGGGTGCCTGACCAGACTGAGATGCCTT
GAAAACTGGAGTGGGGATGACCAGGAGAGTCCACCTTCACACCAGCAGTG
GTGTAGGGGCTAGAGAAGGTAGAGGCTGGGCGTTGAGCTGACCGCTGCAT
GGTGTCTTGTTTCAGAACCTGGATAGAAAACTTGTCACAGAATGCCCTGA
ACAACTGGATGCGCGCTTGCAAAAATTGGGCCAGAAGTTAGGAGAAAACC
CCGCATTGGGCTTATTGTCCTTGGGCCCACGTTTTTGAACACACCCCGGG
CATTTCTTTTTTGGTTGGCGAGAATAAAACAAACTGCGGGAATCCCCAAT
TCCCTCTTCTGAAGAACG
ATATATATAATAAAATACGTTGGTCGTCGGAGCGAGATAATCACCNTGCG
GCATTTTTAAANNNNNAGCAAAAAGGAATAAAGGGGGGGTAAAGGCCCCT
GGGGNCGAGNCCCGGCCCCTGGGNNNTGGTCTCCCGCAAAAAAAAAAAAA
AGGGGGTGGAAACAACCTTAAATAAGNAAAAAGGGGTAAATCTTCCCCCC
GGGGAAAAAATTTNCCCCAGCAAATTAAGCCTTCCCAAATAAATTAATTC
CAAAGGGAAAAGGGGGGGGGGGTTCCCCCAAAGGGTTTTTTTTCCCAATG
GGGAAAAAAAGGGGAAAAAGGGGGTCTCTCCAAAATAAAAAAAAAAGGGG
GGGCGAAAAAAAAAAGAGCCCCCCCCAAAAAATAAAAAAAAAAAAACCCC
CCCCCCCCCTTCTAAAAAAAAAANNAAAAAAAAAAAATAAGATATAAAAA
ACCCCCCCCCCCCCCCCCTTGTGGGTGGGGGGGGGGGGAAACCTCCCCAA
AACTTTTAAAAAAAGAGTTTNTGAAGTTAAGGGGGAGGCGTACCCCAGAG
GGCAACCCTTTGGGGAGAGAGGGAGCGATNGGGAAGTTCTTCTTAAAAAA
GGCTTTCTTCAAAAAAACAAAAATCCTTTTTAAAAAATTTAAAAAGCNNN
CAAAAAACCCCCGGCAAAAATTTTTAAAAAACGGCCAAGGAAAANCNAAA
AAAGANNNAAAAAAAACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_m23.b1 MSMg01no366_m23.b1 CHROMAT_FILE:
MSMg01no366_m23.b1 PHD_FILE: MSMg01no366_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:45 2005
         (245 letters)



>mm_chr7_146839550_146840194
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagcggcttcattgcccactctaggtaccaaccacctagcaaacgatatgcacccaagg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tgagcggcttcattgcccactctaggtaccaaccacccagcaaacgatatgcacccaagg 386

                                                                       
Query: 61  ctctcacaactacagaaagactaggagccaggaggtgaaggcagctacaggcatggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctcacaactacagaaagactaggagccaggaggtgaaggcagctacaggcatggcagg 326

                                                                       
Query: 121 aggcagcatgggtgagcgcttacttaggtcagcgctcctcctcaaaccagggagctatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcagcatgggtgagcgcttacttaggtcagcgctcctcctcaaaccagggagctatga 266

                                                                       
Query: 181 gaagggcctgtgagactcatagcatgagaggagctgtgcgagggagctgctggtacctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagggcctgtgagactcatagcatgagaggagctgtgcgagggagctgctggtacctgg 206

                
Query: 241 atagg 245
           |||||
Sbjct: 205 atagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)