BAC Information

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BAC

Clone NameMSMg01-366O16
Chromosome7 (Build37)
Map Location 81,789,637 - 81,790,174
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308
Downstream geneEG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366O16.T7 (MSMg01no366_o16.b1)MSMg01-366O16.TJ (MSMg01no366_o16.g1)
ACCAG474514AG474515
length756753
length of high quality
(start - end)
507 (79 - 585)538 (79 - 616)
definitionCHROMAT_FILE: MSMg01no366_o16.b1 PHD_FILE: MSMg01no366_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:54 2005CHROMAT_FILE: MSMg01no366_o16.g1 PHD_FILE: MSMg01no366_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAAATCCG
CGGAATTCTCCCAGTTTCCTAGGAGATAATAAAAGATTGTGTGACATTTT
AATCTGAAAGCATTATTCCTAGACTCTCAAGGCATCTCACTTTATTTCAT
CAACATCTCACTGCCTCTTCTGTATGCTCTGTAATAATGTCTCCAGTAAT
CCCACCAAAAGGCTATGAGTACTATGATGATAGTCTTTTCATCCTGTTTT
TGCCACCTGAAAATGTCTACTCCCTTTCCTTGTGAATCCACAAGTGTTGC
TCCTGTGATTATGTGAATAATCTTTTCACTTCCAGAAATCCATTAGGACA
ACATCTACAAGTCATGAGTTAAGATGGACCAGTAGACCCACCTGTCATCA
GAGCTCATTTATAATGCTACAACTGTATCACTAAACTTCATGATCCCGTT
CTTATACCATGTGTATCATGAGTACCTTTAATTGTGTGTATATTTTAAGG
AATACGTTTGTATTCATTATTAATGCTGCTTCCCTATAGTGTGATCACAC
TTTTCACCATGTGAATCTCCAGAGTCTAAATGTAAAAATAAAGATGACGC
TGTCTCAGGACATTATCTCCCTTTAAGTGTGAATTCTATGGCTTTTCCTT
TTGCTTTTCTTATGTTAATTTTATATTTTAAAGCTCTGACACCATTATTA
AAACTTACTGCTATTACATTTCACACTTCATTCAAAAACAAAAAGTTTCT
TCTTTG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACATGTATATATTTTCCCAC
CAGGTAAAGGGAACATGCCCAGAAGGCTGTGATCAGTGCTTGCTAGCTGG
ATGAACCTGTCTTCCCAGGGGATAAGTTGGACCGCCGAAGCAATTTGAGT
TCTAAACCAACCACTACAGGTATTAAGGCCCTGACACAGGATAACTGTTT
AGTGTTTCTTCCAAATAACAGGCCTTTCCACGGAAGGCACCTAGATTAGA
AACTCCAGATCGAAGGTGACAGTTTTATTCTTTGTCATTTGAGTCAATCT
AGGCCACTGTGTTCTGAGAGGGGCTTTGGGGTATCAGTGACTTCCCATGC
TATTTAGAAAGGTGGCACACCCCCAGAGGACCTCATTGCACTTAAACCTG
ATCTTCCGAGCAGACATGGGAGCATCCTCCATTATGATTTCATGCACTGC
TATCACTGTGACCAGTGTGAAATGAGAACTGGTGACAGGGGCTTATTTTA
AATGTCCTTGCCAGTCAGCACAGAGCATGGATCATAGGAGACTTGGAGCT
GTTCTTTTCCTGTTTTTTTTTTTTTAACGAGCTAATAAATATGTAAACCC
CCTATCTTTATTCATAACCTGNCAGGGATCAGACATGAAAATAATACGCC
CAATCCACTATTTTATCTATAAAATTGTGTTGAGGTAATATCCGCCAACC
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_o16.g1 MSMg01no366_o16.g1 CHROMAT_FILE:
MSMg01no366_o16.g1 PHD_FILE: MSMg01no366_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:54 2005
         (538 letters)



>mm_chr7_81789437_81790374
          Length = 938

 Score =  948 bits (490), Expect = 0.0
 Identities = 526/538 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacatgtatatattttcccaccaggtaaagggaacatgcccagaaggctgtgatcagtg 60
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 201 ttacatgtatatattttcccaccaggtaaagggaacatgccctgaaagctgtgatcagtg 260

                                                                       
Query: 61  cttgctagctggatgaacctgtcttcccaggggataagttggaccgccgaagcaatttga 120
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 261 cttgctagctggatgaacctgtcttcccagggcataagttggaccgctgaagcaatttga 320

                                                                       
Query: 121 gttctaaaccaaccactacaggtattaaggccctgacacaggataactgtttagtgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctaaaccaaccactacaggtattaaggccctgacacaggataactgtttagtgtttc 380

                                                                       
Query: 181 ttccaaataacaggcctttccacggaaggcacctagattagaaactccagatcgaaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccaaataacaggcctttccacggaaggcacctagattagaaactccagatcgaaggtg 440

                                                                       
Query: 241 acagttttattctttgtcatttgagtcaatctaggccactgtgttctgagaggggctttg 300
           |||||   || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtcagatcctttgtcatttgagtcaatctaggccactgtgttctgagaggggctttg 500

                                                                       
Query: 301 gggtatcagtgacttcccatgctatttagaaaggtggcacacccccagaggacctcattg 360
           ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||
Sbjct: 501 gggtatcagtgacttcccatgctatttagaaaggtggcagagtcccagaggacctcattg 560

                                                                       
Query: 361 cacttaaacctgatcttccgagcagacatgggagcatcctccattatgatttcatgcact 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacttaaacccgatcttccgagcagacatgggagcatcctccattatgatttcatgcact 620

                                                                       
Query: 421 gctatcactgtgaccagtgtgaaatgagaactggtgacaggggcttattttaaatgtcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctatcactgtgaccagtgtgaaatgagaactggtgacaggggcttattttaaatgtcct 680

                                                                     
Query: 481 tgccagtcagcacagagcatggatcataggagacttggagctgttcttttcctgtttt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccagtcagcacagagcatggatcataggagacttggagctgttcttttcctgtttt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)