BAC Information

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BAC

Clone NameMSMg01-367D02
Chromosome7 (Build37)
Map Location 139,924,242 - 139,924,579
singlet/doubletsinglet
Overlap geneA930008G19Rik
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik
Downstream gene2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367D02.T7 (MSMg01no367_d02.b1)MSMg01-367D02.TJ (MSMg01no367_d02.g1)
ACCAG474724AG474725
length784802
length of high quality
(start - end)
338 (70 - 407)174 (56 - 229)
definitionCHROMAT_FILE: MSMg01no367_d02.b1 PHD_FILE: MSMg01no367_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:16 2005CHROMAT_FILE: MSMg01no367_d02.g1 PHD_FILE: MSMg01no367_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGCATTCCAGGACAGTTCCTAGCCCAGACATGGATGGAGATGTGGGT
GGCAACTCTGCTCTTTCAGCAAAGCACACGTTAATTCCAGCTGACCTGCC
TGGCATTCAGCAGCCTTCTGCAACTTAGCAGGGTATCCGAGTTGCTGAAT
GCATCAGGAATGGCTCCAAGGTTTCTGCCACAGAGGAGGCCCAGTAGGGA
CCTCCCTGGTGTACTGGAGGGGCTCAGGGCTCTGGTTCCCAGAGGTTAGT
AGGTGGGCTCTGAAGGTAGGGGTACGGTGTGGAAAGGTGGGGGAGGGAGA
CAGAAGGGCCATGTAAGAGGCTTTCCCAGCCAGAGCCTCTTCTAGTCCAG
CTGAGACGAGACCCAGCTTTCCAGAATACCTATCCATTTTCAGGCGGATA
AATGTTACTGTAAACTCTCTATCGTCCTGAGCGGGAATGCTATGCAACGT
ATCCTCTTGATTACCACATACCTCGAGGATACCCATGGTCTTCAATACCA
ATTGCGGCTCTCTATCACGGCGTTTCTCTTTTTTTCTTTTCCTCTTCCCC
TTTTTTCCTCTTCTTCCTCCTTCTTTCTCCACCCCCCTCTCCTCCTTTCC
TTCTTTTCCCTCTTCCTTTTCCTTCTTCTTTTCCCTCTTCCCCTTTTTCC
TTCTTCCACCTTCCTCTCCCTTCCCTTTTTTTTCCCTCCCTCTCCCCCCT
TTCCTTTTTTCCCTTCTTCTTCCCACTTTTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTATTTTGTGGAATAGTTTGAGGAGTATTGGAATTAGGCCTTCTTT
GAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTT
TTGGTTGAGAGACTATTAATGATTGTTTATATTTCTTTAGGGGATATGGG
ATGGTTTAGATCATTTCTCTGATCTTGATTTACCTTTGGTACCTGGTATC
TATCTAGAACATAGTTCATTTCATCCAGATTTTCCAGCTTTCTTGAGTAT
TATTTTTTTGTATTATGATCTCATTTTTTTTTTATTTTCCTCTGTTTCTG
TTGTTATATATCTTTCTCACTTTTGGCTTTGTTGATTTGGCTACTGTTCT
CTGTGCTTTTTTGTTTACTTTGGCTTTCTGTTTTTTCTACCTTTGTTCAT
CATTCTTTTATTATCTTTTTCTTGATCTTTCGCTGACTTTTATGTTACAT
TCTTTCCTTTCGCTTTTCATATTGCTTCGTTTTCTTTTTCCTTTACTCTC
TGCTTATTTTTTTTTTCCCTCCTCTCTAACTATCTTCTTTCCTTGTTTTC
CCTCTCTCTTTTTTCCATTCTCTCTTTATTCTTTTGTTTTTTCTTTTCTT
TTCTTTTCCCTTCTCACATTTTTTTCCTTTCTTAAGTCACCCTTTTACTT
CCTCGTCTTTTCTCTGGTATTATTTTTATTTCTTTCTTTTCTTTTTTTTT
ATTTTCTCTTCTTTTTATTTTTTTTCTCTTTCCTTTTTAATTTGTTATTT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_d02.b1 MSMg01no367_d02.b1 CHROMAT_FILE:
MSMg01no367_d02.b1 PHD_FILE: MSMg01no367_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:16 2005
         (338 letters)



>mm_chr7_139924042_139924779
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctagcccagacatggatggagatgtgggtggcaactctgctctttcagcaaagcacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctagcccagacatggatggagatgtgggtggcaactctgctctttcagcaaagcacac 260

                                                                       
Query: 61  gttaattccagctgacctgcctggcattcagcagccttctgcaacttagcagggtatccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaattccagctgacctgcctggcattcagcagccttctgcaacttagcagggtatccg 320

                                                                       
Query: 121 agttgctgaatgcatcaggaatggctccaaggtttctgccacagaggaggcccagtaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttgctgaatgcatcaggaatggctccaaggtttctgccacagaggaggcccagtaggg 380

                                                                       
Query: 181 acctccctggtgtactggaggggctcagggctctggttcccagaggttagtaggtgggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctccctggtgtactggaggggctcagggctctggttcccagaggttagtaggtgggct 440

                                                                       
Query: 241 ctgaaggtaggggtacggtgtggaaaggtgggggagggagacagaagggccatgtaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaaggtaggggtacggtgtggaaaggtgggggagggagacagaagggccatgtaagag 500

                                                 
Query: 301 gctttcccagccagagcctcttctagtccagctgagac 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctttcccagccagagcctcttctagtccagctgagac 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)