Query= MSMg01no367_j02.b1 MSMg01no367_j02.b1 CHROMAT_FILE:
MSMg01no367_j02.b1 PHD_FILE: MSMg01no367_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:46 2005
(529 letters)
>mm_chr7_95325065_95325992
Length = 928
Score = 986 bits (510), Expect = 0.0
Identities = 522/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaagaatcacaggtaagattgtctctttttcctttttgtgtttccaaagcaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagaatcacaggtaagattgtctctttttcctttttgtgtttccaaagcaaa 263
Query: 64 catatgaagatgtgaaaatgattctaagattggaatggaggcaataaaagatgaaattat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 catatgaagatgtgaaaatgattctaagattggaatggaggcaataaaagatgaaatcat 323
Query: 124 agagaccttggcaatttacatttcatgtactgtgtactgaccaatacaaaattatacacg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagaccttggcaatttacatttcatgtactgtgtactgaccaatacaaaattatacacg 383
Query: 184 cttttttgaaaaaaaatcctagtattaataattcaactctcaatgtcaggctgcatcaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttttttgaaaaaaaatcctagtattaataattcaactctcaatgtcaggctgcatcaag 443
Query: 244 aatcatttgtgaattctgcttaatcttcacatgtaacctggaaagcacatatttacttct 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 aatcatttgtgaattctgcttaatcttcacatgtaac-tggaaagcacatatttacttct 502
Query: 304 ttatttttctcaataatttatttttcattcactttatatccctatcctgatcacatctcc 363
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 503 ttatttttctcaataatttattttttgttcactttatatccctatcctgatcacatctcc 562
Query: 364 ctctccctcctcttctctagttccacccttaaaaattcctttcgcctggaccctccagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctctccctcctcttctctagttccacccttaaaaattcctttcgcctggaccctccagaa 622
Query: 424 tgcaccggagaccagggaggtgagagacctcaggattcaaagggagggaccttagatgta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgcaccggagaccagggaggtgagagacctcaggattcaaagggagggaccttagatgta 682
Query: 484 atgcctgaaaataaggacagggaatttctagagcccaccttaagca 529
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atgcctgaaaataaggacagggaatttctagagcccaccttaagca 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_j02.g1 MSMg01no367_j02.g1 CHROMAT_FILE:
MSMg01no367_j02.g1 PHD_FILE: MSMg01no367_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:46 2005
(489 letters)
>mm_chr7_95444443_95445331
Length = 889
Score = 938 bits (485), Expect = 0.0
Identities = 488/489 (99%)
Strand = Plus / Minus
Query: 1 agacacatttggctctagagccccatgactttcatccagtgacagcttgttgaggaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agacacatttggctctagagccccatgactttcatccagtgacagcttgttgaggaggag 452
Query: 61 cacatgaccagaatgagcaggaggggggaaggcagaaagaagaaaggcattggcacaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cacatgaccagaatgagcaggaggggggaaggcagaaagaagaaaggcattggcacaagt 392
Query: 121 tagatttgaagacaccatagttatttgtaaaacaaggacatcaggaataaaagagattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagatttgaagacaccatagttatttgtaaaacaaggacatcaggaataaaagagattac 332
Query: 181 acacagaagtgtaacactgggactccattgatccaatgcaagttgataagcttgtcccca 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 331 acacagaagtgtaacactgggacttcattgatccaatgcaagttgataagcttgtcccca 272
Query: 241 gtggccaaacacaagtactttagactttgcagtgtcagcacttactgtgtctgttgggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtggccaaacacaagtactttagactttgcagtgtcagcacttactgtgtctgttgggtt 212
Query: 301 ctttggctcacttaggcaggttaaatgtcataaatgcatttttgacacaattatttccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ctttggctcacttaggcaggttaaatgtcataaatgcatttttgacacaattatttccaa 152
Query: 361 ctcacagtgtacgtatcaagatctgagccaagctgagataaagacatattaaagagtatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ctcacagtgtacgtatcaagatctgagccaagctgagataaagacatattaaagagtatg 92
Query: 421 gaaactccatcatcagtaggctaaatgttggtgattttatccaatctgctaaaataatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gaaactccatcatcagtaggctaaatgttggtgattttatccaatctgctaaaataatcc 32
Query: 481 aggtaggcc 489
|||||||||
Sbjct: 31 aggtaggcc 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
