Query= MSMg01no367_n10.b1 MSMg01no367_n10.b1 CHROMAT_FILE:
MSMg01no367_n10.b1 PHD_FILE: MSMg01no367_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:07 2005
(569 letters)
>mm_chr7_134670037_134671007
Length = 971
Score = 1054 bits (545), Expect = 0.0
Identities = 561/567 (98%), Gaps = 3/567 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagatagcatgaggtacatagtgagaccttgtctcaaagagaaaaaatctggg 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 206 gaattccaagatagcatgaggtacatagtgagaccttgtctcaaagaaaaaaaatctggg 265
Query: 65 cttgagagatggttgagcagttaagagcattgactggtcttccgaaggtcctgagttcaa 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttgagagatggttcagcagttaagagcattgactggtcttccgaaggtcctgagttcaa 325
Query: 125 atcccacaaccacatggtggctcacagtcatccctaatgagatctgatgccctcttctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atcccacaaccacatggtggctcacagtcatccctaatgagatctgatgccctcttctgg 385
Query: 185 gtgtctgaagacagctacagtgtccttagatataataataaagaaatcttaaaaaaatct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 gtgtctgaagacagctacagtgtccttagatataataataaagaaatcttaaaaaa-tct 444
Query: 245 tttggatctttataccattggtctgtatgttctgcatgttaaggttggttttttaaatta 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttggacctttataccattggtctgtatgttctgcatgttaaggttggttttttaaatta 504
Query: 305 ctgtttctgtaattaaaaaaaa--tttatgctctcttatttgtaattataaacacaggtt 362
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtttctgtaattaaaaaaaaaatttatgctctcttatttgtaattataaacacaggtt 564
Query: 363 tatgtgtctgtgtatggatatgcatacatgatagcagatgccaacagaggctagagtctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgtgtctgtgtatggatatgcatacatgatagcagatgccaacagaggctagagtctt 624
Query: 423 tagatcccctggacctggacttacagatggttttgagtcacttgataagggttctgggaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagatcccctggacctggacttacagatggttttgagtcacttgataagggttctgggaa 684
Query: 483 ttgaacttaggtcttctagaagtggaatagtgttcttaaccaataagctatcattctagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgaacttaggtcttctagaagtggaatagtgttcttaaccaataagctatcattctagc 744
Query: 543 ccttgatttaattatttttaaatttca 569
|||||||||||||||||||||||||||
Sbjct: 745 ccttgatttaattatttttaaatttca 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 971
Length adjustment: 10
Effective length of query: 559
Effective length of database: 961
Effective search space: 537199
Effective search space used: 537199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_n10.g1 MSMg01no367_n10.g1 CHROMAT_FILE:
MSMg01no367_n10.g1 PHD_FILE: MSMg01no367_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:07 2005
(519 letters)
>mm_chr7_134818676_134819595
Length = 920
Score = 905 bits (468), Expect = 0.0
Identities = 507/520 (97%), Gaps = 1/520 (0%)
Strand = Plus / Minus
Query: 1 cagaggatacagaagctatagatatcaggattggtcactgtccttgatgccgaatgttag 60
|||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct: 720 cagaggatacagaagctatagatatcaggactggccactgtccttgatgctgaatgttag 661
Query: 61 agaggagtcctcttcccgggctaagatccagacttcatttgaaggaacatgacaagtcag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 660 agaggagtcctcttcccgggctaagatccagacttcatttgaaggaacatgacaggttag 601
Query: 121 tcactggtgtgcttcagcagtggggtgtcctaagagcctgtcacatcagcagagtcaggt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 600 tcactggtgtgcttcagcagtggggtgtcctaagagcctgtcgcatcagcagagtcaggt 541
Query: 181 gaagcactggagagctttatggggactct-tcgaaactaggctggcattgcccatgtgat 239
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 540 gaagcactggagagctttacggggactctagcgaaactaggctggcattgcccatgtgat 481
Query: 240 ctgctttggtaatgcctgcctgtctttcccagccctgctggaagggacatgtcagaacag 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctgctttgggaatgcctgcctgtctttcccagccctgctggaagggacatgtcagaacag 421
Query: 300 gactcgggcgctctggctgtacacatgcagtgtgagagaacaagactgcgagaagctgtg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 gactcgggcgctctggctgtacacatgcagtgtgagagaacaagactgcgagaagctgcg 361
Query: 360 tcatccagtgcctgtaggacagttgctatagagaccaagtgccggagaaagactgctgtg 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcatccattgcctgtaggacagttgctatagagaccaagtgccggagaaagactgctgtg 301
Query: 420 ccagagatctctaaagaaagctgcatcaaggtcaaggtgtagtgtgtgtgcaaagatatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccagagatctctaaagaaagctgcatcaaggtcaaggtgtagtgtgtgtgcaaagatatc 241
Query: 480 caagtgtcagaaattcgtgcacacaagtgcaggatatggc 519
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 240 caagtgtcagaaatccgtgcacacaagtgcaggatatggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
