BAC Information

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BAC

Clone NameMSMg01-368D22
Chromosome7 (Build37)
Map Location 113,963,855 - 113,964,322
singlet/doubletsinglet
Overlap geneOlfr701
Upstream gene9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700
Downstream geneOlfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368D22.T7 (MSMg01no368_d22.b1)MSMg01-368D22.TJ (MSMg01no368_d22.g1)
ACCAG475518AG475519
length756751
length of high quality
(start - end)		548 (48 - 595)475 (71 - 545)
definitionCHROMAT_FILE: MSMg01no368_d22.b1 PHD_FILE: MSMg01no368_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:38 2005CHROMAT_FILE: MSMg01no368_d22.g1 PHD_FILE: MSMg01no368_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTAGAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTTCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCTCTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GGCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACCATTG
CTCTGTAGTAAGCTTTAGGTCTGGCATGGTGATTCCGCCCAGAATTCTTT
TTATCTTGAAAAAACTTTTTGCTATCCTAAGGGTTTTTTTTTTTTTTTCC
ATTTTA

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCAGACTGAAGAACTCTTTAATAGGTAAA
AAGAACAGCAGAGACTGGAAAACTTAGTGGCATAAGAAATATTACAAAAT
AATTCTGAATGTTTCATGTAAACATAGACCATACTCCATTTATTTCTTTA
GTATGATAATTGAAAATTAAACAATTAAAATATATGTCCCATGATATCTC
AAGATAAAAATAGAAAGATATGAGACTGATCAAAAATTCAAAATGTAGAA
AGCAATACAGTACAAATGTTGAGGACTTTGCTGGTAGTTTTTCTTTTCTT
TTTTTTTCCTTTTTTACCCTTTATCTTTATAATCATACTGTTACTACAAT
TGCAAAATTGTTTGCTGTAGTCAAAATATATTCATAAGCCTCATTGTAAC
AACAAAGCATCCATGCATAGTAGACTCATAAATAGCAAGGAAGGAATCCA
GCCCATTACTAAGGAAACTGATTAATGACNAAGGAAAACTACGAGAAAAC
TAAAAGAAAAGTGAAGGTGGAGATAATCTAAGTACAGTATTTGTGTTGCA
GGGATTATTGTAGTATGTCCCTTTCTCTATATAAATCTCAGGGCCTAGTT
TCTACTGGCTGAAATAGCTAAGCTCCCATCCCCCGCTCTGATCTAAATTT
TAAGACCAAAGCGCCAAACCTATAATCCATGGAACTTAAACCCCCCACAA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_d22.g1 MSMg01no368_d22.g1 CHROMAT_FILE:
MSMg01no368_d22.g1 PHD_FILE: MSMg01no368_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:38 2005
         (475 letters)



>mm_chr7_113963855_113964729
          Length = 875

 Score =  868 bits (449), Expect = 0.0
 Identities = 462/468 (98%), Gaps = 3/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagactgaagaactctttaataggtaaaaagaacagcagagactggaaaacttagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttcagactgaagaactctttaataggtaaaaagaacagcagagactggaaaacttagtgg 409

                                                                       
Query: 61  cataagaaatattacaaaataattctgaatgtttcatgtaaacatagaccatactccatt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 408 cataagaaatattacaaaataattctgaatatttcatgtaaacatagaccatactccatt 349

                                                                       
Query: 121 tatttctttagtatgataattgaaaattaaacaattaaaatatatgtcccatgatatctc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tatttctttagtatgataattaaaaattaaacaattaaaatatatgtcccatgatatctc 289

                                                                       
Query: 181 aagataaaaatagaaagatatgagactgatcaaaaattcaaaatgtagaaagcaatacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagataaaaatagaaagatatgagactgatcaaaaattcaaaatgtagaaagcaatacag 229

                                                                       
Query: 241 tacaaatgttgaggactttgctggtagtttttcttttcttt---ttttttccttttttac 297
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 228 tacaaatgttgaggactttgctggtagtttttcttttctttcttttttttccttttttac 169

                                                                       
Query: 298 cctttatctttataatcatactgttactacaattgcaaaattgtttgctgtagtcaaaat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cctttatctttataatcatactgttactacaattgcaaaattgtttgctgtagtcaaaat 109

                                                                       
Query: 358 atattcataagcctcattgtaacaacaaagcatccatgcatagtagactcataaatagca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atattcataagcctcattgtaacaacaaagcatccatgcatagtagactcataaatagca 49

                                                           
Query: 418 aggaaggaatccagcccattactaaggaaactgattaatgacnaagga 465
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 48  aggaaggaatccagcccattactaaggaaactgattaatgacaaagga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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