BAC Information

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BAC

Clone NameMSMg01-368G20
Chromosome7 (Build37)
Map Location 96,648,787 - 96,649,248
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039924, LOC666598, EG621562, Tmem135, LOC100039969, Fzd4
Downstream genePrss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368G20.T7 (MSMg01no368_g20.b1)MSMg01-368G20.TJ (MSMg01no368_g20.g1)
ACCAG475657AG475658
length774878
length of high quality
(start - end)		465 (45 - 509)---
definitionCHROMAT_FILE: MSMg01no368_g20.b1 PHD_FILE: MSMg01no368_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:52 2005CHROMAT_FILE: MSMg01no368_g20.g1 PHD_FILE: MSMg01no368_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCTAACTGGTCAGAAACACTAAGCAACAACTCTCTAAACAGAAT
TGTGCTATCAGGAGAAACTGCAGCGCTAGAGTAGTGCACCTGACGGTTTT
AAATTCCTTCTCCAGGGCAGTGGGAAACTTTGAAATGCTCGCAAATGGGA
AGGACATTTAATTAATGGTAGATATAACGTGACAGAGAGTAAAGAAAATC
TGAGCACGCTTAGCGAGTGTTTATTACCCAACGCTGGCTGTTTGGTAAAC
AATAAACTGAAAGGAATTACACGTGTTAATGCCCAGGTTTATAGATTCAA
GTGTGATCACAATGTTTTAGCCTTTTCCACAACTCCCATGAAAAATTAGA
TTTTTCGATTTAAATTCCCCTTTCTCCCAGTAAGTCTTGATGGCATTTTT
CTATATTTAAGAACTCCAAAAGAACAGAGCAGGGGCATTAGAGACTTTAT
GGAACAGAAGAAAAGTCACAATTGAGGTGATCAGTACAGAATGATTCTTC
CTGGTACTCTGCTGTAGCTGGNNCACAAACATCTTTGCTACAGTGGNNAA
GCAAGATGAGAAAATTTGGGGAATTTCCTATCTTTGCCGTGGACTGCCCT
GGCATTATCTGGGAGAAGAAAACCTGCCCTTTTTAAAGGAAAAGGTTTGG
GGCCCCAAAGGGGTTTTCCCCAAAGACATTATTCCCGTTGGGCCCACCGG
TTTTGCCAAAATGGATTTTTTTCC

ATGCGAGGAGAGTTAGGGGGTGGCTTTCGTGCTCTGCTTTCTCATTTCTT
TATTTCTGTTTACTTCTTTCTTAGATTGCACCTTGCCGTAGTTCTCTTCT
TCTTTTCCTCGTCGCTGTTGCTCTGTTTTCTCTCTTCCGCCCGTCTGTTC
TTTGTCTTCGCATTTTTCTTTATTTTNNNNNTGTTGGTTCTTATCTTTNC
TTTNNTTTTTTTTTTTTCCGGCCCAAAAAGTTGCACTTAAGAGGGGGGGN
TTAAGGGGGCCCCCCGTGGGGGNCGGGGGGCCCCGGGACCCCCTGGGGGG
GCCTCTTTTTTTCCGAAAAAAAATTTTTTTTTTAAAGGGGGTTTGGGAAA
CCCACCCCTTTTTAAATTTAGGGGGAAAAAGGGGGGGTTATTTTCTCCCC
GGGGCCGGGGGGGGGAAAAAAAAATTTTTTTCCTTTTTCCCAAACCCCCC
CCCCGGGGGGAAAAAGGGNNAAAAAAAAAAATTTTTTTTACCCCCCCTTG
TGGGGGGGGGAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGCGCCCCCCC
CTTTTTTTGGGGTGGGGGGGNAAAAAAAAAAAAATAAATCTTTTAAAAAT
AAAAAATAATATTTATTTTTGTTTTCTCCCTTCTTTTTTTTCCCCCCCCC
CCCCCCCCCCCCCTTTTTTTTGGGTGGGGGGGGGGNNCCNCTTTCCTATA
ATCATATTAACATTCATTATCTAAAAAAAAAAAAAAAAAATAATCTTTTT
TTGTTGGTGGGGGGGGGGGGGGGGGGCCTTTTTTTTTTTTTTTTTTTTTC
CCCCCCCCCCCCCCCCCCCCCTAGTAAAAAAAAAGAGTAGATTCCTTCCC
CCCCCCTCACTATATTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_g20.b1 MSMg01no368_g20.b1 CHROMAT_FILE:
MSMg01no368_g20.b1 PHD_FILE: MSMg01no368_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:52 2005
         (465 letters)



>mm_chr7_96648584_96649448
          Length = 865

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcctaactggtcagaaacactaagcaacaactctctaaacagaattgtgcta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcctaactggtcagaaacactaagcaacaactctctaaacagaattgtgcta 263

                                                                       
Query: 64  tcaggagaaactgcagcgctagagtagtgcacctgacggttttaaattccttctccaggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaggagaaactgcagcgctagagtagtgcacctgacggttttaaattccttctccaggg 323

                                                                       
Query: 124 cagtgggaaactttgaaatgctcgcaaatgggaaggacatttaattaatggtagatataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtgggaaactttgaaatgctcgcaaatgggaaggacatttaattaatggtagatataa 383

                                                                       
Query: 184 cgtgacagagagtaaagaaaatctgagcacgcttagcgagtgtttattacccaacgctgg 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgacagagagtaaagaaaatctgagcacgcttagcgagtgtttattacccaacgctgg 443

                                                                       
Query: 244 ctgtttggtaaacaataaactgaaaggaattacacgtgttaatgcccaggtttatagatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtttggtaaacaataaactgaaaggaattacacgtgttaatgcccaggtttatagatt 503

                                                                       
Query: 304 caagtgtgatcacaatgttttagccttttccacaactcccatgaaaaattagatttttcg 363
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 caagtgtgatcacaatgttttagccttttccacaactctcatgaaaaattagatttttcg 563

                                                                       
Query: 364 atttaaattcccctttctcccagtaagtcttgatggcatttttctatatttaagaactcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttaaattcccctttctcccagtaagtcttgatggcatttttctatatttaagaactcc 623

                                                     
Query: 424 aaaagaacagagcaggggcattagagactttatggaacagaa 465
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 aaaagaacagagcaggggcgttagagactttatggaacagaa 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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