BAC Information

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BAC

Clone NameMSMg01-368I10
Chromosome7 (Build37)
Map Location 91,822,863 - 91,823,349
singlet/doubletsinglet
Overlap geneZfand6
Upstream geneIl16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah
Downstream gene2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368I10.T7 (MSMg01no368_i10.b1)MSMg01-368I10.TJ (MSMg01no368_i10.g1)
ACCAG475729AG475730
length746753
length of high quality
(start - end)
535 (70 - 604)487 (69 - 555)
definitionCHROMAT_FILE: MSMg01no368_i10.b1 PHD_FILE: MSMg01no368_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:59 2005CHROMAT_FILE: MSMg01no368_i10.g1 PHD_FILE: MSMg01no368_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCACTATTTCCTAAGACCTATCAAGTCATCAGTTATTGGCCAAATT
AACAGTACCAAGTATGGGTTCTGTCTTATGGAGTGGATTCCAAATCCCAT
CCATGCCACTGTTGTACCAGTGGGTATATTTTGTCAGACAAGTTATTATT
GTAGATCACAGGGTTCATGGCTGGGTAAGAGTGCTGTTGACTTTTCTACC
ACAGCAGCCTGCACAGTACCTTTCAATACTATGAAAGTTATCCAGGATGG
ATGAAGCTTCTACGTCAGTACCCTCTTGATTTATTCCTATTCTGTGACTC
AAGTATATGGTGACTTCAACAATAAATAATATTACCATCAAGTTCTGGAA
TATAAACAAAAACAATGTTAATAATCTGTTGTTGGGATATTTAATGAAAC
CCTACTAAACAAAACTTGAAAGGAAGTAATTCACATCTGGCATGCAGATT
TTAGTTTGATAGCCTGTGACACCTGAAAAAAGCATTATACTCCCTTATAG
GGTAACTCCGTTTTAGCTGCTTTTGAATAAATATTTTTAGGAAGCTTCTA
CAATAGTAGGTTTTGAATGTCTTTTTGAAAGGTTTAGTATTAGTTATCTA
TCCCTGTTTCCTCACTCTTCCCTTTCATCCTAAATCCTGTTTAACCCTTC
CTGTTCATTTTCCCTTTCATCCTTTCTTCACCTGTGGTTTAAAATN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCACATTTAATAAAGGCTTGAAACCAAGCTG
TGTTAAAGGAAGATTAGGCAGAGTGTGAAAGCCCTTTATCTGAGTTGTGG
AATTACTAATGACTGTTTCTGAAACTGATGGACTGGGCCTTGTGTAAAGG
TTTATCATGCACCCAGGTGTGCGTAGTGTCTGCTTGGAAGCACAAGGCAA
ACAGCCTTACCTTACAATGTCTTATCTGATATAGAAGATTTGGTAGAAAG
CCTCATTCTACCCCACCGTTTTGCATTGTCACAAACAATATCACTTTAAA
AAATGGAGGCAAACTCCAAATAAATGGAATAATTTTCATTTCAAATATGT
CTTTTCCTTTTACCATACTATGTCGTCTACCCTACACTGTATGTACTTAA
GGCAAAACATGTATGTACTTGAGGAACAACAAAAAATAGCTTTTCTTTCC
TTTGTAGTTTTGAAAGAAAATGTGAGTGGCTAGTACTTCTTTTAAAGGAA
GTGATTTTCAATTATTTGGAATAATGGTATTACAGTAAATGTCCCCTATG
AAAGCCCAAAAGGTTTTGCTTTTACCTACCCCCTAATTTTTTTTTTTGAA
AAGAAACTATCATACTGGTTTTCCAAAATTTTAATTAACCGGGTTTTCTA
TCCCCAAAAAGATTTTACCTCGTTTTTTATAAAAAAAAAAATCCCATATT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_i10.g1 MSMg01no368_i10.g1 CHROMAT_FILE:
MSMg01no368_i10.g1 PHD_FILE: MSMg01no368_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:59 2005
         (487 letters)



>mm_chr7_91822663_91823549
          Length = 887

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacatttaataaaggcttgaaaccaagctgtgttaaaggaagattaggcagagtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctcacatttaataaaggcttgaaaccaagctgtgttaaaggaagattaggcagagtgtga 628

                                                                       
Query: 61  aagccctttatctgagttgtggaattactaatgactgtttctgaaactgatggactgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aagccctttatctgagttgtggaattactaatgactgtttctgaaactgatggactgggc 568

                                                                       
Query: 121 cttgtgtaaaggtttatcatgcacccaggtgtgcgtagtgtctgcttggaagcacaaggc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 567 cttgtgtaaaggtttatcatgcacccaggtgtgtgtagtgtctgcttggaagcacaaggc 508

                                                                       
Query: 181 aaacagccttaccttacaatgtcttatctgatatagaagatttggtagaaagcctcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaacagccttaccttacaatgtcttatctgatatagaagatttggtagaaagcctcattc 448

                                                                       
Query: 241 taccccaccgttttgcattgtcacaaacaatatcactttaaaaaatggaggcaaactcca 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 taccccaccgtaaggcattgtcacaaacaatatcactttaaaaaatggaggcaaactcca 388

                                                                       
Query: 301 aataaatggaataattttcatttcaaatatgtcttttccttttaccatactatgtcgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aataaatggaataattttcatttcaaatatgtcttttccttttaccatactatgtcgtct 328

                                                                       
Query: 361 accctacactgtatgtacttaaggcaaaacatgtatgtacttgaggaacaacaaaaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 accctacactgtatgtacttaaggcaaaacatgtatgtacttgaggaacaacaaaaaata 268

                                                                       
Query: 421 gcttttctttcctttgtagttttgaaagaaaatgtgagtggctagtacttcttttaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcttttctttcctttgtagttttgaaagaaaatgtgagtggctagtacttcttttaaagg 208

                  
Query: 481 aagtgat 487
           |||||||
Sbjct: 207 aagtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)