Query= MSMg01no368_j17.b1 MSMg01no368_j17.b1 CHROMAT_FILE:
MSMg01no368_j17.b1 PHD_FILE: MSMg01no368_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:05 2005
(603 letters)
>mm_chr7_88371404_88372406
Length = 1003
Score = 1042 bits (539), Expect = 0.0
Identities = 590/621 (95%), Gaps = 24/621 (3%)
Strand = Plus / Minus
Query: 7 ggaattctaggaattgcgctacttgattgctcccgagatgtgttagccacagaacaacag 66
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggaattctagtaactgggctacttgattgctcccgagatgtgttagccacagaacaacag 625
Query: 67 cagagtttaaacctctgagcctgagatgagacaggcgtgcctccatgtgccttggtgaag 126
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 cagagtttaaacctctgagcctgagatgagacaggcgtgcctccatgtgcctcggtgaag 565
Query: 127 tgacccatgggtgccagtgcagagcacctgt-------ctcgtgtgcctcgcctcaatcc 179
||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 564 tgatccatgggtgccagtgcagagcacctgtgcctgacctcatgtgcctcgcctcaatcc 505
Query: 180 ctgacattttaaagaaatgacgagaggcgataactgacttggtccatttcccacaaacac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgacattttaaagaaatgacgagaggcgataactgacttggtccatttcccacaaacac 445
Query: 240 acaaagcaccgggggcaccaggcagagtgttatgttaacatgaggtttttaccccagccc 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 acaaagcaccgggggcaccaggcagagtgttatgttaacatgaggtttttaccccagctc 385
Query: 300 ctcattgcatgca----------------gtgtgattctaaacacttcacagtttcaggt 343
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 ctcattgcatgcagtgtgattctggacatgtgtgattctaaacacttcacagtttcaggt 325
Query: 344 tcctctcaaatatggtcaagccaaagattctactaaggaataaatttcttataaaaatga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctctcaaatatggtcaagccaaagattctactaaggaataaatttcttataaaaatga 265
Query: 404 aataatccaataaaatataactcatttgagttgacaaatattatttttaaataaaatgta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aataatccaataaaatataactcatttgagttgacaaatattatttttaaataaaatgta 205
Query: 464 aagtttttcattagactgcacc-aaatgttttaaaatttgacctaacaaaactaattttg 522
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 aagtttttcattagactgcaccaaaatgttttaaaatttgacctaacaaaactaattttg 145
Query: 523 aaattaagatagattgaaacatctaagaatagatccaagagggggctagaaagatggttt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aaattaagatagattgaaacatctaagaatagatccaagagggggctagaaagatggttt 85
Query: 583 agcaattaagagcactgactg 603
|||||||||||||||||||||
Sbjct: 84 agcaattaagagcactgactg 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_j17.g1 MSMg01no368_j17.g1 CHROMAT_FILE:
MSMg01no368_j17.g1 PHD_FILE: MSMg01no368_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:05 2005
(518 letters)
>mm_chr7_88164289_88165206
Length = 918
Score = 804 bits (416), Expect = 0.0
Identities = 474/518 (91%), Gaps = 39/518 (7%)
Strand = Plus / Plus
Query: 1 tgggattaaagtgcgacaccactgccctgctaagaaagagaactgtgaagcaagctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggattaaagtgcgacaccactgccctgctaagaaagagaactgtgaagcaagctctcc 260
Query: 61 tgtagtgctcaggctgacctcagacataactgcaactggccttgacctcctgaccctcca 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagcgctcaggctgacctcagacataactgcaactggccttgacctcctgaccctcca 320
Query: 121 gcttccaccccccccagccccccagtgctgaggggcaggcatttgccacccaccacacct 180
|||||||||| |||||||||||||
Sbjct: 321 gcttccaccc-------------------------------------acccaccacacct 343
Query: 181 atctttgttttgttttttctgagacagggtttctctgtgtggccctggctgtcctggaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atctttgttttgttttttctgagacagggtttctctgtgtggccctggctgtcctggaac 403
Query: 241 tcactttgtataccaggctggccttgaactcagaaatctacctgcctctgcctccaggtg 300
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 404 tcactttgtagaccaggctggcctcgaactcagaaatctacctgcctctgcctccaggtg 463
Query: 301 ctgggattaaaggcatgcaccaccatgcccgcagttttgttattttttgagatgaagtct 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctgggattaaaggcatgcgccaccatgcccgcagttttgttattttttgagatgaagtct 523
Query: 361 tgctatatagctcaggctagccttctcttaatctcctacctcagccttcccgagaggtga 420
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgctata--gctcaggctagccttctcttaatctcctacctcagccttcccgagaggtga 581
Query: 421 gactgtaggtacacactagcactcctgtactagctaactgacttctagcaaatatatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gactgtaggtacacactagcactcctgtactagctaactgacttctagcaaatatatttt 641
Query: 481 atgtctgatcattctctgcaaacccatgacgaattcct 518
||||||||||||| ||||||||||||||||||||||||
Sbjct: 642 atgtctgatcattttctgcaaacccatgacgaattcct 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
