BAC Information

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BAC

Clone NameMSMg01-368N19
Chromosome7 (Build37)
Map Location 18,362,264 - 18,362,748
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30
Downstream genePpia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368N19.T7 (MSMg01no368_n19.b1)MSMg01-368N19.TJ (MSMg01no368_n19.g1)
ACCAG475987AG475988
length745752
length of high quality
(start - end)		599 (45 - 643)482 (69 - 550)
definitionCHROMAT_FILE: MSMg01no368_n19.b1 PHD_FILE: MSMg01no368_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:25 2005CHROMAT_FILE: MSMg01no368_n19.g1 PHD_FILE: MSMg01no368_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTTGCTCTGTACCCCATCTTTAATATGGTTATCTGGTTCTG
TTGAGTCTAACTTCTTAAGAACGTTGTATATATTGGATATTAGCTCTCTA
TCAGATGTAGGTTTGGTAACGATTTTTTCCCAATCTGTTGGTTGCCTTTA
TGTCTTATTAACAGTGTCCTTTTCCTGAGAGAAGCTTTGAATTTTATAAG
GTCCCATTTATCTATTCTTGATCTGACAGCACAAGCCATTGGTGTTCTGT
TCAGGAATTTTTTCCCCTGTGCCCATATGTTTGAGGCTCTACCCCACTTT
CTCCTCTATAAGTTTCAGTGTATCTGGTTTTATGTGGAGGTATTTGATCC
ACTTCGACTTGAGTTTTGTACAAGGAGATAAGAATGGATTGATTTGCACT
ATTCTACATGCTAACCTGCACTTGAGCTAGCACCATTTGTTGAAAATGCT
GCCTTTTTTCCATTGGGTGGTTTTAGCTTCTTTGTCAAAGATCAAGTGAC
CATAATTGGGTGGGTTCATTTCTGGGTCTTTGCTTCTGTTCTATTGAGCT
GCATGCCTGTCAGTGTACCAATACAATAGTGGAATTTTGATGGGGATTGC
ACTGAATCTTGTGGATTATTTTCAGCAAGATGGCCATTTTAAGTACATTA
ATTCTTACCCTCCATGAGACAGGGGAAATCTTTTTGTCTTCTGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAAAAATATTTCTGATATTGCAGGTTCTCTA
TACCAGATGTGTCTTACACTAAATGCTCAAGCCAACTGTGGGCATAAAAA
AAGTCTGGCAGGGAGTAGGCAAGTCCAAGACAAGTCTTGGTTTACAAAGT
AGAAACACTCAATAAACTTGTCACACAGATGTAAAAAATGAAATATGTAG
ACTGTTTACAGGGTGAAACACATGGTTCTCTTTAGGTTCAACCTCAGCAT
TTCAGATTTGTAGGGGGTGGGGGGAATCTGTTTTCACCTGGGTGGCATTC
TGAAACTTCAGAGATTCCATTGCTGAACATTGTTTCTCTGATGCTATGGG
CAGGCTATAGGACATTGGTGGTTATTACAAACTGCATGTTCATCCATGTC
AGCAGCATTTACCCGTTTGTATTAGGAAAAAGTCTTGAACATTCTTTGAC
ACATTAAGTACTAATTGAACATTGTCCCCTTCAGCTGCATTGAGAAACAG
TGATACAATGGTGAGTTGAACAATATCAGGAAAGGACCATTTGAAGTCAG
GCTAGATATACTAGCAAGATTTTGTTGAAAGACCCAGATATAGCTGTCTC
TTGGGAGAATATGGCCGGGCCTAACAAAACAGAAGGGAAGCTCCCAGTCA
GCTATTGATGGGCCCCAAGGCCCCCCTGGAGGAATTTAAAAAACCCCCAC
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_n19.g1 MSMg01no368_n19.g1 CHROMAT_FILE:
MSMg01no368_n19.g1 PHD_FILE: MSMg01no368_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:25 2005
         (482 letters)



>mm_chr7_18362064_18362948
          Length = 885

 Score =  905 bits (468), Expect = 0.0
 Identities = 480/486 (98%), Gaps = 5/486 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaaatatttctgatattgcaggttctctataccagatgtgtcttacactaaatgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaaaaatatttctgatattgcaggttctctataccagatgtgtcttacactaaatgctc 626

                                                                       
Query: 61  aagccaactgtgggcataaaaaaagtctggcagggagtaggcaagtccaagaca----ag 116
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||    ||
Sbjct: 625 aagccaactgtgggcataaaaaaagtctggcagggagtaggcaagtcc-agacatgatag 567

                                                                       
Query: 117 tcttggtttacaaagtagaaacactcaataaacttgtcacacagatgtaaaaaatgaaat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcttggtttacaaagtagaaacactcaataaacttgtcacacagatgtaaaaaatgaaat 507

                                                                       
Query: 177 atgtagactgtttacagggtgaaacacatggttctctttaggttcaacctcagcatttca 236
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 506 atgtagactgtttacagggtgaaacacatggatctctttaggttcaacctcagcatttca 447

                                                                       
Query: 237 gatttgtagggggtggggggaatctgttttcacctgggtggcattctgaaacttcagaga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatttgtagggggtggggggaatctgttttcacctgggtggcattctgaaacttcagaga 387

                                                                       
Query: 297 ttccattgctgaacattgtttctctgatgctatgggcaggctataggacattggtggtta 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttccattgctgaacattgtttctctgatgctatgggcaggctataggacattggtggtta 327

                                                                       
Query: 357 ttacaaactgcatgttcatccatgtcagcagcatttacccgtttgtattaggaaaaagtc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttacaaactgcatgttcatccatgtcagcagcatttacccgtttgtattaggaaaaagtc 267

                                                                       
Query: 417 ttgaacattctttgacacattaagtactaattgaacattgtccccttcagctgcattgag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgaacattctttgacacattaagtactaattgaacattgtccccttcagctgcattgag 207

                 
Query: 477 aaacag 482
           ||||||
Sbjct: 206 aaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 885
Length adjustment: 10
Effective length of query: 472
Effective length of database: 875
Effective search space:   413000
Effective search space used:   413000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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