BAC Information

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BAC

Clone NameMSMg01-369A19
Chromosome7 (Build37)
Map Location 133,999,814 - 134,000,290
singlet/doubletsinglet
Overlap geneCcdc95
Upstream geneD430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a
Downstream geneHirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369A19.T7 (MSMg01no369_a19.b1)MSMg01-369A19.TJ (MSMg01no369_a19.g1)
ACCAG476131AG476132
length740741
length of high quality
(start - end)		481 (42 - 522)344 (70 - 413)
definitionCHROMAT_FILE: MSMg01no369_a19.b1 PHD_FILE: MSMg01no369_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:40 2005CHROMAT_FILE: MSMg01no369_a19.g1 PHD_FILE: MSMg01no369_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCTACCTCTGTCTCCATAATGCTGAGATTAAGGACGCGAGCTACACAC
ACCCAGCTTCCTCATCTTTCAAGGAGCACGTTCCCCGGACTGAAACCCTT
TCCCAGACTCCTCGTGGCCTGCTTCCTGTACGCACTCAATAGCACCCTAG
ATTATCCTCCTCTAAGTCCCATCCATTCGGTTCCTTTTTCCTACTAGGGC
CAATCTATCTTACTGATCTTGTGTCAATTTTGCCAGAACAGGAGCTCTGT
ACGGGGGTTTGTCTCAGTGTCCAGCTAGGATAGTCAACACAGGAGGTGCT
CCAGGACACTTGCTGGTTTCAACTGGTTTGATCACTTTGAGTCTAGGATA
CTTGCTCAGAGTCACACTGTTCTGAATTGTGGGAGCCTTGACTAGACTCT
AAACCCCACAAGCCTGACAGCTCCAGGGCTGCATGCAGTACTTGTACGTG
TACAGAGACGCTTCCCTCTAGCCATGCTGCAGGTCCTGGTCACACACGTA
TGCCGAGGCAGGACCTCATGCCTCCTAACCGGGAGTCCTCCCAAGACACT
GTCAGCACAGTTCTTCTCTCTGCCTTTAGGGCCGAGTCCTTGTCTTGATA
CTTATACAATTCATATTTTCCTTTCCACATTTCTGGATTTTGGGATTGTA
GCGTACCCCTATCGGTTTTTTCTACTTGGTCTATTTCCCT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGCTTTGTGTCTTGTGTCCACCTACCCTACT
TATAGAGCAGAGAAGGAACTGGCTTACTTGAGGGACGCCCACAGCACAAC
TGTGATGGTTTGTATATGGTTGGCCCAGGGAGTGGCACTATTTGGAGGCG
TGACCTTGTTGGAGTAGGTGTGTCACTGTGGGAGTGGGCTTTGAGACCCT
CATCTTAGCTGCCTGGAAGCCAGTCTTCTGTTTGCTGCCTTCAGAATAAG
AGGTGCAACTCTTATCTCCTCCAGCCCCACATTCGCCTGGATGCTGCCAT
GCTCCTGCCTTGATGATAATGGACTGAACCTCCGAACCTGTAAGCCAGCC
CCAATTAAATGTGGTCCTTATAAGACTTGCCTTATGGGGCTAGAGAGATG
GCTCAGTGTTTAATAACACAGTCTGCTCTTCCAGAGGTCCTGGGTTCAAT
TCCCAGCTACCACATGGTGACTCACAACCATCTGTATTGGGAACTGATAC
CTTCTTCTGGTGTGTCTGATGCATTGTACTCATATATTTAATTCACTCCG
CCTTGCGGCGGAGGCGCACGTCCTCTATTCTCTTCATTTTGTTATGCTCC
ATATTTTTTTTATTCTCTTGGTTTCTATTTCCCCCCTTGGTATTCCCAAT
TTATCCTCCTTTTCCCCTTCCTCTATTTCTTTTTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_a19.b1 MSMg01no369_a19.b1 CHROMAT_FILE:
MSMg01no369_a19.b1 PHD_FILE: MSMg01no369_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:40 2005
         (481 letters)



>mm_chr7_133999610_134000490
          Length = 881

 Score =  891 bits (461), Expect = 0.0
 Identities = 473/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctacctctgtctccataatgctgagattaaggacgcgagctacacacaccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctacctctgtctccataatgctgagattaaggacgcgagctacacacaccca 264

                                                                       
Query: 65  gcttcctcatctttcaaggagcacgttccccggactgaaaccctttcccagactcctcgt 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 gcttcctcatctttcaaggagcacgttccccagactgaaaccctttcccagactcctcgt 324

                                                                       
Query: 125 ggcctgcttcctgtacgcactcaatagcaccctagattatcctcctctaagtcccatcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcctgcttcctgtacgcactcaatagcaccctagattatcctcctctaagtcccatcca 384

                                                                       
Query: 185 ttcggttcctttttcctactagggccaatctatcttactgatcttgtgtcaattttgcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcggttcctttttcctactagggccaatctatcttactgatcttgtgtcaattttgcca 444

                                                                       
Query: 245 gaacaggagctctgtacgggggtttgtctcagtgtccagctaggatagtcaacacaggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaacaggagctctgtacgggggtttgtctcagtgtccagctaggatagtcaacacaggag 504

                                                                       
Query: 305 gtgctccaggacacttgctggtttcaactggtttgatcactttgagtctaggatacttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgctccaggacacttgctggtttcaactggtttgatcactttgagtctaggatacttgc 564

                                                                       
Query: 365 tcagagtcacactgttctgaattgtgggagccttgactagactctaaaccccacaagcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagagtcacactgttctgaattgtgggagccttgactagactctaaaccccacaagcct 624

                                                                    
Query: 425 gacagctccagggctgcatgcagtacttgtacgtgtacagagacgcttccctctagc 481
           ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct: 625 gacagctccagggctgcatgcagtactcgtatgtgtacagagacacttccctctagc 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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