BAC Information

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BAC

Clone NameMSMg01-369C10
Chromosome7 (Build37)
Map Location 104,762,390 - 104,762,785
singlet/doubletsinglet
Overlap geneRsf1
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, LOC622994
Downstream geneLOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369C10.T7 (MSMg01no369_c10.b1)MSMg01-369C10.TJ (MSMg01no369_c10.g1)
ACCAG476208AG476209
length1,033854
length of high quality
(start - end)
---396 (123 - 518)
definitionCHROMAT_FILE: MSMg01no369_c10.b1 PHD_FILE: MSMg01no369_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:48 2005CHROMAT_FILE: MSMg01no369_c10.g1 PHD_FILE: MSMg01no369_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATACATAAANNNGNGGGNNGATTCTAAAAAGGGGGGGGAACAAACAC
AGAGTTATCCCACAAGAAGAGGGCGCCGCATTATGAAATCATTGCTCATT
ATCTTTTCCCTATTATTAGTTTTTATACTCCAATAATTGAGGAATAAGAA
TGAGTACATGTCAATTACCTTACTCTATTCATAAGGAGGGGGGGGAGATA
AACATAGACACCCCTAACGGCGTACACCGAGCCGTTTCGCCAGTCGTTCA
TCGGAACAAACAACACGACCACCGAGGCCTAATCGCTTGTTGCCGCCCGC
CCTGCTGCGTTCCACTATTGCAATCCCCGTATAAGCTCATGTAAGGGGCG
GTCTAGTGTGGCGCGCTTCCAGCGACTCACTTTATTCAACACACCAACCC
ATAGCTTACAAGGAGTAGACAGAAGGCGGTGCTCGATGGAGCATTGCCCT
CAATTCGTTATTATACCGACACTTATATCCCATTCACCATTACCGTGAGC
GATGTAATGCTTGGCGCTTGAGCCGAAACCCAGACGTCGTGCCGATAAAC
TGTTGTGTTTCCTATCTTACGACTGATATATACCCCGTACCCTGTCATAC
ATTATATCCGCTAGTAGAATCTGCTCAATAAATTATAATACGTACACGTA
ATCGATAACACTACGCTCCGCTAACGTATGAGTACCTCTTCATATATAAT
TCATATGATCTTACTTACACACGACCAGTCGATGTGGAGAATACTTGCTA
AGTGACTATATATCATTACGACAACTACTATAGAAACGGTCCACCGTTGG
TCTCTCCCCAGTCAACATCAACATGTTCTCATAACCAGACCTACACGCCC
TATTTAATCAGACAGTGTACGATAGACGCGCGATACGCACTACTTACGGA
TTTTTTCTGCGTGCGGACCCTCGTCGTTTAGTTGTATTTATTTCTTCACA
CATTATCGTATCTAAGTGACACGATCGTTCATACCTTGTGCTCGTACAAT
CNTATAAAGATATATTATCTAACACCGTCCCGG
NTTTTTTCCCCCCTTTCTTTCTCATAAANNAAACCTCCCNTCCNNTCTAT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGATTTTTTATTTTACTTGTTATGAA
TTTTGGAAAGATCACCTTCAACTCTTCCTTTCCCAAACATAAGAAGTTTG
CGATTTACCTAACTACATATCAAATCTGCTACCTTTTAACCTAAAGTTAC
TACACCTCAGGCCTGCGACCTTCTTCTCACTTCAGGAAAAAAAAAATCGT
TAAACATAGTCTATACTCAAACCAATATCCCAACTTAGCAGCTGGTAAAT
ATATTTATAGCTCCAAAATATTTATATAAACTCACTTAAATTTCTTGTCC
TTCCCTCAGAGTCCTGAGAATTATTCAGTCTAACTCCCAATCCATTATTT
CTCCCACATTTACACTGAAATCCTTCATAGAAATCACTTTGGTCTGTTTG
ATGCCCACTACCCTCTCCTCTCCTGTTGCTTGTGTATCCTTGAAAGCTAA
CTTCCATGCCCTGATGTGTACCAACTTCCTCTTTCCTTGTCTGGTAATTG
AAAGCCTCACGGGGTTTTACATTCTGTATTGCATGCATTGCCCCTTTTTT
TTTTTACCGCTTGCCGCTTGTTTCTATATTTTCTGTGACCTTTTTGTTTC
TTCATAATTCTTCTTTTGTTCTTCTTTATCTTTTTTTTTCCCCACATCTA
TTCCTTTTTACTAACATCCTTTACCTCGTTCTTCCCTACATTTTTCCTCA
TTATCTCTTTTTTATACCTTTCCCCCTTCCTTTTCATTTTTTTTCTCCTC
TCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_c10.g1 MSMg01no369_c10.g1 CHROMAT_FILE:
MSMg01no369_c10.g1 PHD_FILE: MSMg01no369_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:48 2005
         (396 letters)



>mm_chr7_104762190_104762985
          Length = 796

 Score =  766 bits (396), Expect = 0.0
 Identities = 396/396 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagattttttattttacttgttatgaattttggaaagatcaccttcaactcttcctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaagattttttattttacttgttatgaattttggaaagatcaccttcaactcttcctttc 537

                                                                       
Query: 61  ccaaacataagaagtttgcgatttacctaactacatatcaaatctgctaccttttaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ccaaacataagaagtttgcgatttacctaactacatatcaaatctgctaccttttaacct 477

                                                                       
Query: 121 aaagttactacacctcaggcctgcgaccttcttctcacttcaggaaaaaaaaaatcgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaagttactacacctcaggcctgcgaccttcttctcacttcaggaaaaaaaaaatcgtta 417

                                                                       
Query: 181 aacatagtctatactcaaaccaatatcccaacttagcagctggtaaatatatttatagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aacatagtctatactcaaaccaatatcccaacttagcagctggtaaatatatttatagct 357

                                                                       
Query: 241 ccaaaatatttatataaactcacttaaatttcttgtccttccctcagagtcctgagaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccaaaatatttatataaactcacttaaatttcttgtccttccctcagagtcctgagaatt 297

                                                                       
Query: 301 attcagtctaactcccaatccattatttctcccacatttacactgaaatccttcatagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attcagtctaactcccaatccattatttctcccacatttacactgaaatccttcatagaa 237

                                               
Query: 361 atcactttggtctgtttgatgcccactaccctctcc 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 atcactttggtctgtttgatgcccactaccctctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)