BAC Information

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BAC

Clone NameMSMg01-369C14
Chromosome7 (Build37)
Map Location 107,358,514 - 107,495,983
singlet/doubletdoublet
Overlap genePgm2l1, Gpx2-ps1, P4ha3, Ppme1
Upstream geneMogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577
Downstream geneAU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369C14.T7 (MSMg01no369_c14.b1)MSMg01-369C14.TJ (MSMg01no369_c14.g1)
ACCAG476216AG476217
length754747
length of high quality
(start - end)		455 (42 - 496)482 (75 - 556)
definitionCHROMAT_FILE: MSMg01no369_c14.b1 PHD_FILE: MSMg01no369_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:48 2005CHROMAT_FILE: MSMg01no369_c14.g1 PHD_FILE: MSMg01no369_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,495,647 - 107,495,983)(107,358,514 - 107,358,994)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTAGTTAGTATCACAGGAAAGTGAAGGCAGGCTATGGAAGAATAGCTG
CTTAGAAACTGGGCCTCTAAGTCAAGTAGTGTATATTCCATACTTCTCAA
TGTGTTCACTCATCAGGGTCATATAGCAAAAAATGCAAGTGCACTGGACA
GACCCCAGACCTGCTGAATCAGTATTTTTAGCAGTAAAACCTAGACATAT
AATATACTTTAAAATATTTTTATTATTTATGGGTATAGATAGTTTGCCAC
ATGTTTGCCTGGTCCCTCAGGAACCTCTGGAAAAGCTGCTAGTGTAGTGT
TGTTGTTTTGTTTTTGTTTTTCAAGACAGAGTATCTCTGTGTTCCCTGGC
TGTTCTGGAACTTGCACTGTAGACCAGGCTGTCGTCCTTGAATTCAGAGA
TCCACCTGCCTCTGCCTCCCTAGTGCTGGGATTAATGACATAGGCCACAA
CTGCCTGGCTGCAGCCAGTGCTCTTACCCACTGAGCTGTCTCTCTAAGTC
CTGTTATGCATTTTAGACCCGGTCCACCTTCTTACATTTTACAATTTTCT
AAGATAAGGGCTAACTCCTTTTATAACGTAATTTTAAAAATGCGGAACTT
TATTTTTTCCCCCAAAATTTTTATTTCTTATTATTATCCCCCCTTATTAA
TCCAAAATTTTTTTCTAACCTGGTAAATTTTTTTCTTATATTTTTCCCCT
CCCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGAGTCAGGTATGGTGGTGTATAT
CTCTAATCTCAGAATTTGGGAGGCAGAGGCAGGCAGATCCCCGTGAGTTC
ATGGTCCATGTACTGAGTTCCTGGCCAGTCAGGACTATACAGTGAGACTC
TGTCTTAAAAAAAAAACAAAATTAAAAGAAACTTAACTATCTCGTCACAT
TTGTCATATATGTAATGTTTTTCCAACTGTATGCATGTGTACCACATGCA
TGCCTGGTGCCAGAAGATGGAATCAGATCCTCTGGAACCAGAGTCAAGGG
TTGTTGTGAGCTGCCATATGGGAGCTGAGAACTGAACCTGGGTCCTTGAC
AAGAAGTGCTTTCACTTTAGAACTGCACTTTAGGATTCAAGCTTGTTGAC
TGGTTCTGAAGCTGTAGATGGAGATATACTTACCCTACAATTGTTTGCTT
CTATGGGATAAGGAATTGCATAAGAATAATGGGAGCTGCGAGGCTAGGAC
AGTAGTCAAAAAGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTTATACACCTTTATTCAAGAATGAAGCTTGGCTCCCATTTTTTTT
TTTTTTTTTGGACCACTGAATTATGGCCCACTGTTCAACGGAAAAGTTAT
ATTAACTTACTTTTGTTCTCTAAACCCCTTTCGCTTTTTCTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_c14.b1 MSMg01no369_c14.b1 CHROMAT_FILE:
MSMg01no369_c14.b1 PHD_FILE: MSMg01no369_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:48 2005
         (455 letters)



>mm_chr7_107495647_107496501
          Length = 855

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattagttagtatcacaggaaagtgaaggcaggctatggaagaatagctgcttag 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaattcattagctagtatcacaggaaagtgaaggcaggctatggaagaatagctgcttag 278

                                                                       
Query: 65  aaactgggcctctaagtcaagtagtgtatattccatacttctcaatgtgttcactcatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaactgggcctctaagtcaagtagtgtatattccatacttctcaatgtgttcactcatca 218

                                                                       
Query: 125 gggtcatatagcaaaaaatgcaagtgcactggacagaccccagacctgctgaatcagtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gggtcatatagcaaaaaatgcaagtgcactggacagaccccagacctgctgaatcagtat 158

                                                                       
Query: 185 ttttagcagtaaaacctagacatataatatactttaaaatatttttattatttatgggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ttttagcagtaaaacctagacatataatatactttaaaatatttttattatttatgggta 98

                                                                       
Query: 245 tagatagtttgccacatgtttgcctggtccctcaggaacctctggaaaagctgctagtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tagatagtttgccacatgtttgcctggtccctcaggaacctctggaaaagctgctagtgt 38

                                                
Query: 305 agtgttgttgttttgtttttgtttttcaagacagagt 341
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  agtgttgttgttttgtttttgtttttcaagacagagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no369_c14.g1 MSMg01no369_c14.g1 CHROMAT_FILE:
MSMg01no369_c14.g1 PHD_FILE: MSMg01no369_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:49 2005
         (482 letters)



>mm_chr7_107358313_107359194
          Length = 882

 Score =  909 bits (470), Expect = 0.0
 Identities = 479/482 (99%), Gaps = 1/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagtcaggtatggtggtgtatatctctaatctcagaatttgggaggcagaggcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaggagtcaggtatggtggtgtatatctctaatctcagaatttgggaggcagaggcaggc 261

                                                                       
Query: 61  agatccccgtgagttcatggtccatgtactgagttcctggccagtcaggactatacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agatccccgtgagttcatggtccatgtactgagttcctggccagtcaggactatacagtg 321

                                                                       
Query: 121 agactctgtcttaaaaaaaaaacaaaattaaaagaaacttaactatctcgtcacatttgt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agactctgtcttaaaaaaaaa-caaaattaaaagaaacttaactatctcgtcacatttgt 380

                                                                       
Query: 181 catatatgtaatgtttttccaactgtatgcatgtgtaccacatgcatgcctggtgccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatatgtaatgtttttccaactgtatgcatgtgtaccacatgcatgcctggtgccaga 440

                                                                       
Query: 241 agatggaatcagatcctctggaaccagagtcaagggttgttgtgagctgccatatgggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatggaatcagatcctctggaaccagagtcaagggttgttgtgagctgccatatgggag 500

                                                                       
Query: 301 ctgagaactgaacctgggtccttgacaagaagtgctttcactttagaactgcactttagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagaactgaacctgggtccttgacaagaagtgctttcactttagaactgcactttagg 560

                                                                       
Query: 361 attcaagcttgttgactggttctgaagctgtagatggagatatacttaccctacaattgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 attcaagcttgttgactggttctgaagctgtagatggagatatacttaccctgcaattgt 620

                                                                       
Query: 421 ttgcttctatgggataaggaattgcataagaataatgggagctgcgaggctaggacagta 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcttctatgggataaagaattgcataagaataatgggagctgcgaggctaggacagta 680

             
Query: 481 gt 482
           ||
Sbjct: 681 gt 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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