BAC Information

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BAC

Clone NameMSMg01-370C17
Chromosome7 (Build37)
Map Location 61,594,587 - 61,595,018
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370C17.T7 (MSMg01no370_c17.b1)MSMg01-370C17.TJ (MSMg01no370_c17.g1)
ACCAG476980AG476981
length802799
length of high quality
(start - end)
418 (36 - 453)432 (66 - 497)
definitionCHROMAT_FILE: MSMg01no370_c17.b1 PHD_FILE: MSMg01no370_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:07 2005CHROMAT_FILE: MSMg01no370_c17.g1 PHD_FILE: MSMg01no370_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAA
AAGTATTAATTCACTTAAACATTATTATTTTGTGAAAGTTCACCTTCATA
TTGATCTGTAGGACAGTAGAGTAGGCTGTCTCCCAAGAAGCTATCATACC
AGATTTATAGGCAGTAAGTGTTGGTATTTAGTCTAGGCTCTGCCCCACAG
TTACCTAGCAATAGCCAGACATGCCTGACTCATTATAAAAGGGGCTGCTT
GCCCCCTTCTTACTCTCTTGACTTCTTGCTCTTGCCCTCTTGCTCTTGCT
CCTTTCTGTCACTCACTCTCTCTCTCTCCCCTCCCCCATTCTCCACATGC
TCATGGCCAGTCTATCCTCTCCCCACTCCCCTCTGCTTTTCTCTCAACTC
CCCTCTTCATGCCCTGAATAAACTCTACTCTATACTATACAGTTCAGTCT
GTGCGGTTGGTCCCTCAGGGGGAAGGGATGCCTCGGCATGTGACCAAAGA
GGCAACCTTTTCCCCTACACCTGACTGCACATCCCTCAAATATATCTCTA
GTTTCTTTTCTTTTATAAAACCAACAGTAAGAGTCTCCCATAACCATTCA
TACCATGCTTAGTGCANGAGAAGATAACAATGTCCAACTTGAAAAACCCT
TCCTACCAGGAAGCAAACAGAATTGAGCCCCCAAATTGGGCTCCTCCCGA
AACCCTTGAAATGGGGAAAAAAGGAACAAAAATCTTGTCCCCAGTTCTAA
CGCCTCGTGGTTTAGAGGGGGTAAGTTTTTTTTCCTTTTNCCCNCTCCCT
CC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAAGATTCTCATGCGGAAAGTGACTCAAATCTAG
TTTCTGTGATACATTTGGAGAGATATCAGGAATATCTTATGTTAGTGGAG
GGAATGCCAGACATTATGGGGAACACAGCTTTGTTCCTGATAGGATTCTG
TGGAGCTAACATTAAAGCAAACCATCTCACCGAAAGGCAGTGAATCCCAG
ATATAAATATAATATTCTCATTATATTTTCGTTATTTTTAATCAGTGATT
AATTTTGCCTTCATAGAAATAAGACCCCTATCCTGTTGTAAAGCATCATT
TCCAGCAATCTGAGATAAGCAGGAGTGCTGCTCATGGGATTTCTAAATGA
TAAAGTATAGGTTAGGTATTAGGAAAGAAGATTCTGGAAGCCATGTGCTT
TCTGTGCATGCTCATCTGTGCCCCACAAAGCAGTGGCACTAATACTCANG
GATCAGGTAAGATGGACTTTCTGAGAATAATCCTGAAATAGGCCCTCAGC
AATAATTTACAGGGGAGCTTTTTTGATTGTCCCCCTTACTTGATGGTTTT
GTTTTTACTGTGTGTTTTACCCGGGCGTACTTCCCTTTTCCTTTGTGGCA
CGGTTAACGATTCATTCTTCTTCTCCGCCTCTCTTCTCTCGTTATTCGCT
CTTTCTTGTCTTTTTGCCTTTTCCTCCTGTTTTTACTTTTTCTTGCCCTC
CCCCTCCTCTTTTTATTTTTTTCGCCCTCTCCGCTATCTCTCATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_c17.g1 MSMg01no370_c17.g1 CHROMAT_FILE:
MSMg01no370_c17.g1 PHD_FILE: MSMg01no370_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:07 2005
         (432 letters)



>mm_chr7_61594387_61595218
          Length = 832

 Score =  797 bits (412), Expect = 0.0
 Identities = 427/432 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagattctcatgcggaaagtgactcaaatctagtttctgtgatacatttggagagata 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagattctcatgtggaaagtgactcaaatctagtttctgtgatacatttggagagata 260

                                                                       
Query: 61  tcaggaatatcttatgttagtggagggaatgccagacattatggggaacacagctttgtt 120
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 261 tcaggaatatcttatgttagtggagggaatgccagacattttggtgaacacagctttgtt 320

                                                                       
Query: 121 cctgataggattctgtggagctaacattaaagcaaaccatctcaccgaaaggcagtgaat 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cctgataggattctgtggagctaacattaaagcaaaccatcccaccgaaaggcagtgaat 380

                                                                       
Query: 181 cccagatataaatataatattctcattatattttcgttatttttaatcagtgattaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagatataaatataatattctcattatattttcgttatttttaatcagtgattaattt 440

                                                                       
Query: 241 tgccttcatagaaataagacccctatcctgttgtaaagcatcatttccagcaatctgaga 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tgccttcatagaaataagacccctatgctgttgtaaagcatcatttccagcaatctgaga 500

                                                                       
Query: 301 taagcaggagtgctgctcatgggatttctaaatgataaagtataggttaggtattaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagcaggagtgctgctcatgggatttctaaatgataaagtataggttaggtattaggaa 560

                                                                       
Query: 361 agaagattctggaagccatgtgctttctgtgcatgctcatctgtgccccacaaagcagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagattctggaagccatgtgctttctgtgcatgctcatctgtgccccacaaagcagtg 620

                       
Query: 421 gcactaatactc 432
           ||||||||||||
Sbjct: 621 gcactaatactc 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)