BAC Information

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BAC

Clone NameMSMg01-370I19
Chromosome7 (Build37)
Map Location 29,323,623 - 29,324,027
singlet/doubletsinglet
Overlap genenone
Upstream genePld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28
Downstream geneSycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370I19.T7 (MSMg01no370_i19.b1)MSMg01-370I19.TJ (MSMg01no370_i19.g1)
ACCAG477271AG477272
length797791
length of high quality
(start - end)
394 (40 - 433)405 (70 - 474)
definitionCHROMAT_FILE: MSMg01no370_i19.b1 PHD_FILE: MSMg01no370_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:38 2005CHROMAT_FILE: MSMg01no370_i19.g1 PHD_FILE: MSMg01no370_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AAAAAGACAGAGAATAGGTTCAGATATATATATATATATATCAATCATAT
ATATATACACACACACATATATATACTATATATCATATATATGTATGTGT
GTATACATACATACATACATATATACATACATACATATATACATATATAT
CTGGGTTACCAAGTGATCAAGTGAGACTAGACTATGGGGGACAAAAGATA
CATAAGAAGAAGGGAAGGAAGGAAGTGAGAAGAGGGCTGGGCTGCAGGGT
TGGTGGAGCACTTGCCCAGCAGTCACAAAGCTCTGGGAGTGATCTCCAGC
ACTGCATAAACCAGGCATGAAAGAGCACACCTGTGACCCCGGCACTTATA
GCTACGAGGGTCAGAAGTTCATAGACATCCTTGGCTACAAAGCAAATGTG
AGGCCTGGACTGCCTAAAACTAAGTCTTTTTTTTTTTTTTTTCTTTTCCT
TTTCCTTTTCCTTTGGGGTTTTGTGAAAAGGGATTCTCTTGAAAACCCTT
GCTGCCCTGGAATTCCCTTGTATAAAAACCTGGCCTTGTATACTTAAAAA
AAACTTCTTGCGCTTCCCCTCCCCTTGCTTGAATATAACGGCTCTCCATT
TCTCATTCCCCATTCCCTTTATCTTTATTTCTTCCAGGTTCTCTAACTTC
CCCCCTCTTCCCACTTTTTTCTCTTCGCCCCTTTAACTCCCCTCTCTTTT
CTTTCTTCCCTTTTTCCCACTCTTTCCCTCTTTTCCCACTCCCTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGAACTCAG
AAACCTGCCTGCCTCTGCATACATGGTGGCGCTAGAGATGAGTCCCTCAC
ACATGCAAGGCTCATCCTCCATCACTGACTTCCATCCCAGGCACCGAAGC
ACACTGTCAGCCATCCACTGTCACCATTACAATCCAACAAACAGCATTGG
AGAAAAGCACTGTCCATTTCCCAGGCGAAGAGACTGTGTGGGGTGCATGT
CTATAATGCAGCACTAAGGAGGCTGAGACAGGAGGATGGCTGTAAGTTTA
AGGCCAGCTATGTTGGGAGCTATTAAGGCAACGCTATTGTCCTGATCTCT
AAACTGGGCCTCTCTCTCCCCCCACCCCAGAAGAAAAGAGGGTCAAAAGC
GGGTCACCGACACACTGCTCTGAGAACAACCACAGAAAGTTCCAGCCCTA
AATCATCGCAGATGTCCTGACCATAACCCTGATAACGCCCAAGTTCCTGC
TTTCCGGGGGAATTGCCTAAAGAAAGGGCAATTCTATTGCCCTACCCCCC
CCCCTGATAAAAACCCGGGCTTCCCCTTTTCTCTGGGGAAATCCATTGGC
CCTTCCCTCCTCGGTGGAAGGAATTCCCCTTTTTGTTTGGGGTTTAATCC
TGGGCCCCCCCTCAACCCAGGGGGGCTTTTGACATTCCACACCCCTCCCA
TCCCTTCTCTCTTCCCGACACCCCTACTTTTCCCTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_i19.g1 MSMg01no370_i19.g1 CHROMAT_FILE:
MSMg01no370_i19.g1 PHD_FILE: MSMg01no370_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:38 2005
         (405 letters)



>mm_chr7_29323423_29324227
          Length = 805

 Score =  737 bits (381), Expect = 0.0
 Identities = 399/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctggcctcgaactcagaaacctgcctgcctctgcatacatggtgg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctggcctcgaactcagaaacccgcctgcctctgcatacatggtgg 260

                                                                       
Query: 61  cgctagagatgagtccctcacacatgcaaggctcatcctccatcactgacttccatccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgctagagatgagtccctcacacatgcaaggctcatcctccatcactgacttccatccca 320

                                                                       
Query: 121 ggcaccgaagcacactgtcagccatccactgtcaccattacaatccaacaaacagcattg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaccgaaacacactgtcagccatccactgtcaccattacaatccaacaaacagcattg 380

                                                                       
Query: 181 gagaaaagcactgtccatttcccaggcgaagagactgtgtggggtgcatgtctataatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaaagcactgtccatttcccaggcgaagagactgtgtggggtgcatgtctataatgc 440

                                                                       
Query: 241 agcactaaggaggctgagacaggaggatggctgtaagtttaaggccagctatgttgggag 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcactagggaggctgagacaggaggatggctgtaagtttaaggccagctatgttgggag 500

                                                                       
Query: 301 ctattaaggcaacgctattgtcctgatctctaaactgggcctctctctccccccacccca 360
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 501 ctattaaggcaacgctattgtcctgatctctaaattgggcctctccctccccccacccca 560

                                                        
Query: 361 gaagaaaagagggtcaaaagcgggtcaccgacacactgctctgag 405
           |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gaagaaaagagggtcaaaagcgggccaccgacacactgctctgag 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)