BAC Information

Click to search

BAC

Clone NameMSMg01-370I24
Chromosome7 (Build37)
Map Location 69,626,917 - 69,627,261
singlet/doubletsinglet
Overlap genenone
Upstream geneB230209E15Rik, EG620934, LOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1
Downstream geneEG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7, Otud7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370I24.T7 (MSMg01no370_i24.b1)MSMg01-370I24.TJ (MSMg01no370_i24.g1)
ACCAG477281AG477282
length808779
length of high quality
(start - end)		345 (40 - 384)386 (68 - 453)
definitionCHROMAT_FILE: MSMg01no370_i24.b1 PHD_FILE: MSMg01no370_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:39 2005CHROMAT_FILE: MSMg01no370_i24.g1 PHD_FILE: MSMg01no370_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ATCTACTCAGAAACCTTGACTTAATTCCTTTAAGTATGGTGCCAGGAGTA
ATACCAAGCTAGACTATTTTGTCTTGCTCTTATAGATTAACAGGAAAGTT
CCCTGTGCAAGTTCTGAATCCCTGGGTCATTGTGGCCGAAGCTCTGGGAA
TAATTGTTCCTAGGATCTCTAAGAATACCTACCTGCTCAGTGGCCCTGGA
GGTGGTGCTATGGATAGTGACGCTGAGAGTGGGGGAAGGTTGATCTGGGT
GTTTTTACTAGTTTTATTCTTGATTTTTCAGACCTTTATCCTCTGTAGTC
AACGAAGGCACATGTGGCAGAACAGAGGTGTGAAGAGGGGGAAGTGTGTT
TTGTTTTACCCACCNCCNCTTCCCTTTCTCTCCCCTCTTCCCCTCCCCTT
CTCTTTTCCTTTTTTTCTTCTTCCTTTTATCACCTTCTCTACTCTTTCCC
TTTCTCTCTTCTTCCTTTTTCCCCCTTTTATTTTCTTTCTCTCTCCTACT
TCCCTTTTGCCCCTTTCACCCTTTTTCCTCCCCCCCTCCCTCCCTTCCTT
TTTCCCTTTTCTTCCACCATTCTTTTCCTTTTTCCTTTCATTCCTGTCCT
TTCTTCTTCTCTTTTACATTTTCTCCTTTACTCTCCCCCCTCCTCCCTCT
CATCTTTACCCTCTTCTATCCTCCCCTTTTTTCTTCCGTTTCTTCCAACT
ATCTCTTCTCATTCTTACCTTTCCTTCTCCTTCTCCTCTCTTTCTTCTAT
TCCATTTG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCAGACAACCGGATCCTTCTACAGCAAAGCT
TTTATTGCTTGAACATAAGGAAGACCCCAAACCCGGAAAATGGCACTGCT
TATATAGCCTGCAGTGTGATGTTTCAGCACCTGATGTGGCGTGACAGCAC
CTGATTAGTTGCTCGCCCATCACCCCATTACTATGCCCTGAGATGGGCAG
TGACTAGGTGTGAATTTACTCTTGCACTTGCGCATATGGCTTGTTTACTA
GTTAGGCACAGTGGAAGCCAGCGCCATCTTATAATGGTGATTGCTCACAG
CACGGCTCTCCACATCATGTCTTGTCTCCAGCTCCAGTTTGTCAATGTCT
TATTTTAAAGATTTGCATTTATGTTAATCATGGAACTTGGACTCTTCTTT
TTTTGTCTTGTCTTTATTTACTTTTGGNATCAAGGTAATACTGGGTTTAT
AAAAGGAAATTAAGATTTGTCCTTTTATTTTTTATTTTTCTGAAAAACTC
CCAAAAGAATAAGGGGTAAACCTTCTTTGAGAATCCTGTAAAATTTGAAA
CTTATCCTTCTTGTCCCTGAAAGTTTTAATTTAAAAAAAAACTTTTTGAT
TCTTACACCTGTAAATCGGTTTGAATAACCAAAAACCCCTTTTACTCCTC
CTTCTTTCTTTAATCGAACATTCACAAATCCCATCTTCTTCTTCTTTTAT
GCACAAATCCCGCTTTTTTTCATCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_i24.b1 MSMg01no370_i24.b1 CHROMAT_FILE:
MSMg01no370_i24.b1 PHD_FILE: MSMg01no370_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:39 2005
         (345 letters)



>mm_chr7_69626713_69627461
          Length = 749

 Score =  625 bits (323), Expect = 0.0
 Identities = 338/345 (97%), Gaps = 4/345 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatctactcagaaaccttgacttaattcctttaagtatggtgccaggagtaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatctactcagaaaccttgacttaattcctttaagtatggtgccaggagtaata 264

                                                                       
Query: 65  ccaagctagactattttgtcttgctcttatagattaacaggaaagttccc----tgtgca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||    |||| |
Sbjct: 265 ccaagctagactattttgtcttgctcttatagagtaacaggaaagttccctgtgtgtgta 324

                                                                       
Query: 121 agttctgaatccctgggtcattgtggccgaagctctgggaataattgttcctaggatctc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 agttctgaatccctgggtcattgtggctgaagctctgggaataattgttcctaggatctc 384

                                                                       
Query: 181 taagaatacctacctgctcagtggccctggaggtggtgctatggatagtgacgctgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagaatacctacctgctcagtggccctggaggtggtgctatggatagtgacgctgagag 444

                                                                       
Query: 241 tgggggaaggttgatctgggtgtttttactagttttattcttgatttttcagacctttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggggaaggttgatctgggtgtttttactagttttattcttgatttttcagacctttat 504

                                                        
Query: 301 cctctgtagtcaacgaaggcacatgtggcagaacagaggtgtgaa 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctctgtagtcaacgaaggcacatgtggcagaacagaggtgtgaa 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 749
Length adjustment: 9
Effective length of query: 336
Effective length of database: 740
Effective search space:   248640
Effective search space used:   248640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |