BAC Information

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BAC

Clone NameMSMg01-370M24
Chromosome7 (Build37)
Map Location 89,180,651 - 89,180,966
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370M24.T7 (MSMg01no370_m24.b1)MSMg01-370M24.TJ (MSMg01no370_m24.g1)
ACCAG477470AG477471
length765800
length of high quality
(start - end)
466 (39 - 504)320 (69 - 388)
definitionCHROMAT_FILE: MSMg01no370_m24.b1 PHD_FILE: MSMg01no370_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:58 2005CHROMAT_FILE: MSMg01no370_m24.g1 PHD_FILE: MSMg01no370_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TAAGCATAGAAAATGCTTCTCCCCTTGAGATTTTTAAATGACTTTGACGG
TTAAAGAACAAATTATAACAGTGCTTCATGTGCCGCTCGTGAGGAGGGGA
TGTAATTAATGTAATTATACTGCAAATCAGGAAGAGATGGGAATTAAAGG
GAAGGAAGTTTTCTATATTCATTTTTAACTGTTAAAATGACAATATTGGT
ATACTGTGATGAGTTGTTTACATTTATAGTAGTCATTATCAATCTATAAA
AAAATCCGTATGAAAACACCAGAAAGAATTTAAATAATCTTTAACACAGC
GAAAGGTGAAGTTAAAAAGAAAATAAATTTAAAACAGAGCCAACAAATAA
AAATAAGTAAAATGGCAGCCTTTAGTCAAAACATGTAAATAATTACATTA
AATGTAAATGGCCTAAATATAGCACTTAAACAACAGACTGGAAGAGCATA
TTAATGAAGCATGACAGTTATGGGTTTGAATTTGAATGTTCCCCTCCCTT
TTTAATACTTTAACCTCCAACTGCACTTGGTTTTGGAGGCTATGGAACTT
TTACAATTCTCGCCCGCCTGTTAAAAAGTGTCCACTGAAGCTTTTCCCTT
TGAACGGGCAACCCCTCTGGTCCTGAACCCCCCCCGGGTTGGCCCATTTG
TTTGTTTTCTTTCCCGCTCTTCTCTTTTTTCATGTTTCCTTCCCTCCTCC
TGTTTGTTCTCTTAT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCGAGTGTTGGGTTGACTGCTGAGTTAGGTGA
GCTGGGGCAGATGAGAATTTTTCCCTCTTGAGTCAAGTGAACTGACAGCC
CTCTTCTATTTCTTCTTCCAGGCCCCAATACTGTCTTAGTTTGGAAAGAT
GGAAGAAGTGTAAGTAGCACGGGGAGGGACCTCTGAGTTGACGACAGCCA
CAGCAAAGTATGTGAGCATTGCCTCTCTTACCTGTCCTGCCTCAGCGCTC
ATAGCCTCCTCACTCATGTGAGAGTGGCAAACAGTTCCTATTGTCACTTC
CACTCTACAGAGGAAGAAGGGTGGGGGGTGGGGGAGNNNNNNNNNNNNNN
NTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNN
NNNNNNNNNGNNNNNGNNNNNNNNNNNNGNNGGGTGGGGGTGGGGTTGTT
TTTTTTTTTGTTTGTGTTTGTTNNGTTTTTTTTTTTTTTTTGGTTTTCGT
GGTTTTTGTTTTTTTGTGTTTTTTTTTTGGTTGTTTTGTTTTTGGTTGTG
TGGTTTTGTGTGNTTTGTTTTGTTTTTGTTTTTGTGTTTTTGTTGTTTTT
TGTTGTTTTTTTGTTGGTTTGTTGGTGGTTTTTTTTTTTTNTGTGGTGTT
TTTTTGTTTTTTGTTGTTTTTGTGTTGGGTGTTTTTTGTGGGTTTTTTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_m24.g1 MSMg01no370_m24.g1 CHROMAT_FILE:
MSMg01no370_m24.g1 PHD_FILE: MSMg01no370_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:58 2005
         (320 letters)



>mm_chr7_89180451_89181170
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgagtgttgggttgactgctgagttaggtgagctggggcagatgagaatttttccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgagtgttgggttgactgctgagttaggtgagctggggcagatgagaatttttccctct 260

                                                                       
Query: 61  tgagtcaagtgaactgacagccctcttctatttcttcttccaggccccaatactgtctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtcaagtgaactgacagccctcttctatttcttcttccaggccccaatactgtctta 320

                                                                       
Query: 121 gtttggaaagatggaagaagtgtaagtagcacggggagggacctctgagttgacgacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttggaaagatggaagaagtgtaagtagcacggggagggacctctgagttgacgacagc 380

                                                                       
Query: 181 cacagcaaagtatgtgagcattgcctctcttacctgtcctgcctcagcgctcatagcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagcaaagtatgtgagcattgcctctcttacctgtcctgcctcagcgctcatagcctc 440

                                                                       
Query: 241 ctcactcatgtgagagtggcaaacagttcctattgtcacttccactctacagaggaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcactcatgtgagagtggcaaacagttcctattgtcacttccactctacagaggaagaa 500

                           
Query: 301 gggtggggggtggggg 316
           ||||||||||||||||
Sbjct: 501 gggtggggggtggggg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)