BAC Information

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BAC

Clone NameMSMg01-371G16
Chromosome7 (Build37)
Map Location 122,076,906 - 122,077,346
singlet/doubletsinglet
Overlap genenone
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371G16.T7 (MSMg01no371_g16.b1)MSMg01-371G16.TJ (MSMg01no371_g16.g1)
ACCAG477929AG477930
length7811,754
length of high quality
(start - end)		441 (73 - 513)---
definitionCHROMAT_FILE: MSMg01no371_g16.b1 PHD_FILE: MSMg01no371_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:51 2005CHROMAT_FILE: MSMg01no371_g16.g1 PHD_FILE: MSMg01no371_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGCCCTTACAGACTTCGGACAAGTGCA
TCGGGGAGAAGCTTTGGTCAAGTCTTAGATTCGTTACCATGTGTGACTGC
AATGCAAGGTGGAACTTTTTGAGTGCTCAGCCTTCAGGGCAAACATTTCC
CTTTGGGCTAGTGAGGCGTGCGAGGCACCCTCTTTCCTGTCAGAACCTGT
TAGGGAAAGAATTGTTTGCACAGGGAGCTCCACTTTGACCAAGTCCAGAC
TCCATCAGTCACAGCAGTAAACAAACACCAACAGGCCTGGTGTCTTTATC
CGCATCATTCCTACTGCTGACTTTTCGGCTGAAGGAAAAAAAGAAATGGT
GAATTATTCAAGATCGGGGAGATCGGATTTTGTAACTGTGAATTGTAAGA
TGGCTGAATAGGAAACTATAGTGGCCTATACATATTTTATTCCTATGTTT
TCACTTTCTTACAGAAGATTTCAGTTTCGTTTCTCCCAAGCAAGACTGCT
CACTTTGACATTCCCCGCGGTGTCTGTAGTATGAGGCAAATATTAAATAT
CAGGGGCATAAGTTGGGCCTTAATTTGAATGGGTGGGCCCAGCCAAAAAA
ACTCCCCTATGGTCTTGGTGGAATTTATAATTTTAAAAAAAAAAAATCTG
TTTCCGGGGGGAAAACTTTTTTTAACATCCGTGTGTACGTCCTTCTTTTT
TCATTATTCCTCTCTTATATAATGCGCCCAA

CGGAGATGTCTATCTAGAGGGCGCCGGTGNGTAACTACAACTAACACACT
TAACCAATAGAATACTACAAGAGATACTGCAGAAGNAAAAATAAACNATA
TAAAAACANAACACCTCAATATACTAAGCCCCCTACCACAACACCAACAC
ACGCACACACCCGACGCATAGACACAGAGACTATATACTATACTTATAAC
ATCTACACGTAATAGATGTATGAACGTAGAGGACGTGATGCTCTTCCTTC
TTCATAGTGCGTATAAGGCGTAGCTNTGTCGACGTGCGTGGTTGTGNTAG
TGTTCTTATTTCTAATATTGGTGTGCGTGATCCTAGCTTGCAGCCTCGCT
GAATAGCAGCACGTCTCCTCATGCGCTGGTACTATCTCCGCTGTCGGCTC
GTTGTCTTTGTACTTCACTCGTCATCTGTGTATGTCTCGTTCGCACTCGT
ATAATTACAAGCTACTGCGGATAAGTGCAGCTTGTTCGCGACACGAGAGA
ACATATAAGAGTGTAGAGAAGTTCGCGCAATCCGCTCTCGTCTGAGTAGT
TATCGGGGAGTTAGGCATGTCATGAGTATATACGAGGAGAGCGCACGGCC
GATGATCGATGTCCGCTGACGTGATTAGNGGTGCGCGAGGCACTTAGGAT
GTAGTACGTGCGATCAATACGCGAGGAGTTATACCGACACTCTGCCACTG
CACATATGTCGCGTATATCACGTAATACATTCTAATCACTCAACGCGTCC
GATTATAACACACACGATCAGATGTCATTGCGGTATTAGGTACTCAGTAC
TGCGAGCTGCTTCGATAGTACATTAGGGCGGCGTTACTCATACAATAGTG
CTCATTATATCGCTGTTGCGGCGCTGTGTAGCTGACGTGAGGATGGAGGC
TGTATATATCATCACACACGTTCTCGTGTGGTCGGCTTCTCTCTACTCTC
TGTATATTATGGTGTGAATCTATNGCCACACGTCGCTATGTGAATCGAAG
CGATGTAATNCACAATGTGTGTGTGGCGGCGCAGTTCGGAGCATGTANAG
CGTCGCTGTACTCATTATCAGAACGACAGGAAATGATACNGACTACAGAC
GTCTGCTGCATGGCGTGTACTCGATCGCAATATATCACATGATACAAATC
ATNTGCGTGTACTATGCGCGAATACGTACTCANGCTAGACGTAATATCTN
TAAGGTACGNTGCGCATCTCACTAAGCGTNCTCTCGTACGTGGCACNTAA
GTACGCACAGCTCATACGAAGTGCATATTCTCTGACTGAGTAATGGCGAG
CGTCGTAGCGAGAGTATACAACTACCTGACACATTANGTCGCTTCTATCG
ATACGACATGCATATACTGTGCTAACGCGCTTACGCGAGCAGATGGCGTA
TTACGAGNGNACGAGTCAGCTGCGTGTGAGNTCGCTAGTAGACGACGCGT
CGCTCTCGGCGGACCTCGANATCATGCGACTCGCTCAGTCGTGATATGCG
CTAGAGTCGTGCGCCGTACTCGACACTGTATTCGATAGCATAGCGTTCTA
TGTTCGCTGTCACGCGAGAGTCGGACGAGAGGGTGTCGTGTATAGTATAT
NCGCGGCTCTCTGCGCAGCGTTCAGCGTATTAGTCGGTACGTANTGNTCG
CGACGTTACTGTGACGCGGNCTGTACTGACGTATGNTATGACGCGAGCTA
ATTGCTGTANCGACGTCGTCTTATCATGGATACATNCTCATCTATCTTCT
CACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_g16.b1 MSMg01no371_g16.b1 CHROMAT_FILE:
MSMg01no371_g16.b1 PHD_FILE: MSMg01no371_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:51 2005
         (441 letters)



>mm_chr7_122076706_122077546
          Length = 841

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcccttacagacttcggacaagtgcatcggggagaagctttggtcaagtcttagattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcccttacagacttcggacaagtgcatcggggagaagctttggtcaagtcttagattc 260

                                                                       
Query: 61  gttaccatgtgtgactgcaatgcaaggtggaactttttgagtgctcagccttcagggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaccatgtgtgactgcaatgcaaggtggaactttttgagtgctcagccttcagggcaa 320

                                                                       
Query: 121 acatttccctttgggctagtgaggcgtgcgaggcaccctctttcctgtcagaacctgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatttccctttgggctagtgaggcgtgcgaggcaccctctttcctgtcagaacctgtta 380

                                                                       
Query: 181 gggaaagaattgtttgcacagggagctccactttgaccaagtccagactccatcagtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaaagaattgtttgcacagggagctccactttgaccaagtccagactccatcagtcac 440

                                                                       
Query: 241 agcagtaaacaaacaccaacaggcctggtgtctttatccgcatcattcctactgctgact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagtaaacaaacaccaacaggcctggtgtctttatccgcatcattcctactgctgact 500

                                                                       
Query: 301 tttcggctgaaggaaaaaaagaaatggtgaattattcaagatcggggagatcggattttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tttcggctgaaggaaaaaaagaaatggtgaattattcaagatcggggagattggattttg 560

                                                                       
Query: 361 taactgtgaattgtaagatggctgaataggaaactatagtggcctatacatattttattc 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 taactgtgaattgtaagatggctaaataggaaactatagtggcctatacatattttattc 620

                                
Query: 421 ctatgttttcactttcttaca 441
           |||||||||||||||||||||
Sbjct: 621 ctatgttttcactttcttaca 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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