Query= MSMg01no371_l11.b1 MSMg01no371_l11.b1 CHROMAT_FILE:
MSMg01no371_l11.b1 PHD_FILE: MSMg01no371_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:16 2005
(469 letters)
>mm_chr4_45597861_45598729
Length = 869
Score = 861 bits (445), Expect = 0.0
Identities = 463/469 (98%)
Strand = Plus / Minus
Query: 1 atttgtgcaatgattaacacaccctaggctgtaaggtgagggcaacaggcctgcgaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atttgtgcaatgattaacacaccctaggctgtaaggtgagggcaacaggcctgcgaagtg 610
Query: 61 agtcagaggcaggaagtgagggctgagcagaacctggcaaaggagatgctcacctcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agtcagaggcaggaagtgagggctgagcagaacctggcaaaggagatgctcacctcagaa 550
Query: 121 aacaagactgtcaagtaggaaaaggtggaaagaaaagaatgtctcagaattcctgtgaag 180
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 549 aacaagactgtcaagtaggaaaaggtggaaagagaagaatgtctcagaatttctgtgaag 490
Query: 181 gagcctgtgttggaacacaccacacacggcagggcagtgtggtcaccttacagcggtgct 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 489 gagcctgtgttggaacacaccacacacggcagggcagtgcggtcaccttacagcggtgct 430
Query: 241 ggcagggacctttgggactgctggtttcctcctacctactgcatgagtggggaaatggag 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 429 ggcagggacctttgggactgctggtttcctcctacctactgtatgagtggggaaatagag 370
Query: 301 atcaaagaacaagagggctgcctgggtcccctggaaagcccgggaaagaatccagagctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atcaaagaacaagagggctgcctgggtcccctggaaagcccgggaaagaatccagagctc 310
Query: 361 tggcctcgaaatcctactgttgatccccgactttacatattcccaggatagtgtataact 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tggcctcaaaatcctactgttgatccccgactttacatattcccaggatagtgtataact 250
Query: 421 ccgtctggtcaggaaagatacagagccacagggactacagggagagacc 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccgtctggtcaggaaagatacagagccacagggactacagggagagacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_l11.g1 MSMg01no371_l11.g1 CHROMAT_FILE:
MSMg01no371_l11.g1 PHD_FILE: MSMg01no371_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:16 2005
(519 letters)
>mm_chr7_135298522_135299442
Length = 921
Score = 603 bits (312), Expect = e-177
Identities = 477/558 (85%), Gaps = 52/558 (9%)
Strand = Plus / Minus
Query: 5 gaattcagt-aaaaacag-cacaaggacattctggaagggcttaaagtcggactcagaat 62
||||||| | |||||||| | ||||||| |||||||||||||||||||| ||||||||||
Sbjct: 553 gaattcaataaaaaacagtc-caaggacgttctggaagggcttaaagtcagactcagaat 495
Query: 63 taaacagaaagtgttcaaagccaaacagcaaaatggaagcgttcattagctgctcaactc 122
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct: 494 taaacagaaagtgttcaaagccaaacagcaaaatggaagctttcattagctgttcaattc 435
Query: 123 tatcaaatgtgaacagaaagtttagatcgtggctatctcaacagcacttatttcaaagct 182
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 434 tatcaaatgtgaacagaaagtttggatcgcggctatctcaacagcacttatttcaaagct 375
Query: 183 aaccccaaccattcatcatggagct-caggcatggcactgagtggcacctctgctccagt 241
||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 374 aactccaacctttcatcatggagctacaggcatggcactgagtggcacctctactccaat 315
Query: 242 cctccgtgcagagctggggtctaatgacgatgaccctcttaagagcagagacaaagtaaa 301
|||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 314 cctccgagcagagctgggatctaaagacgataaccctcttaagagcagagacaaagtaaa 255
Query: 302 tgaggtgagactgagcctgagatgccccgggctgggggcggagcacgcgctctgg----- 356
|||| | ||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 254 tgagataagactgagcctgagaagccccgggctgggagcggagcacgcgc---ggaggcc 198
Query: 357 -ctgc---ggagg-------c---cacagc--ccagc--------------------ggt 380
| || ||||| | | |||| ||||| |||
Sbjct: 197 acagccccggaggaaaagaactctctcagcagccagctgccctgaaggggattcataggt 138
Query: 381 gcaggctggttccc-gggcaacagcagcctaaagctctggagtaatgaccacacccaaac 439
|| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| | |
Sbjct: 137 gccggctggttccccgggcaacagc---ctaaagctctggagtaatgatcacaccctagc 81
Query: 440 cctgacacctgcccactgaaacctggactctgttcttgtcaatgctctgtctgcaagtta 499
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 80 cctgacacctgcccactgaaacctggactctgttcttgtcaatactttgtctgcaagtta 21
Query: 500 tggcttggtcttggacac 517
|||||||||||| |||||
Sbjct: 20 tggcttggtcttagacac 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space: 463699
Effective search space used: 463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
