BAC Information

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BAC

Clone NameMSMg01-372L14
Chromosome7 (Build37)
Map Location 150,835,343 - 150,835,777
singlet/doubletsinglet
Overlap geneTnfrsf22
Upstream geneIgf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26
Downstream geneTnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L14.T7 (MSMg01no372_l14.b1)MSMg01-372L14.TJ (MSMg01no372_l14.g1)
ACCAG478921AG478922
length753753
length of high quality
(start - end)
431 (52 - 482)462 (86 - 547)
definitionCHROMAT_FILE: MSMg01no372_l14.b1 PHD_FILE: MSMg01no372_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:32 2005CHROMAT_FILE: MSMg01no372_l14.g1 PHD_FILE: MSMg01no372_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCTTTTACTTGCTGTTTATAACAAATATGATTCTGTTAATAACGTCATAG
GCATTTAAAATTACGTTATTTATAGAAAACTAGATATTACTGAGCACTGA
TTGTGGTGGGAAGGCAAGAGTGGTGGCGCTGGACCCGCCCACGAGATAAG
GCAACCACACAGAACCAATCCCCTGAGGAGAGGCGTGGCCACCACAGCAG
CTCCTCCCAGCTGAGCAGCAGCGGCGTGCTTGCACTCGGCCATGTTTGGC
TTCTTCTGCAGCTTGGTCTCCAGTCTGAGTCGCTGGTTCCTTTGGCGGCG
GCTGCTGCTGCTGCTGCTGCTGCTTAATCTGCCCTTGCAGGTGAGTAGAT
ATGGCCCTGCGGAGCTGAGATTCGCTCTGGGCACCGGATCCCCGGACTGC
AGAGGAAAGCTACTGCCAGCGGTGAACTGGTGGCGTGTTGTGCCATCAGC
CTGGGTATCGCCCACCAACACCTCAGAACTTCGTCTGCTCTTAAGTGGTC
CACAGATGGTTTATTGTGGATTTCACCCACATTTTTCTTTTCTTTCCCTT
CCTCCTTCTCATTACCCAATTTCTCACTCTCTTTCCCCTTACTCTCCTTC
CTTTTCCTACCCGCCCTTCTTTTTTCTCTCCCACTCCAACTCTCCAATCT
CTATATCTTCTTCCCCAATTTTTCCCCCCCCCTTTCTATTTCCTCTATTT
TCA
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXGCTGAGAAAANNNNNAAAAAAAAAAAAAAAACCAA
GGGCAGGCAGAGTGAGGCACTAGGCCAAAGGTAGTCACCCCATGCAAACC
AACCAATGCCTGAAAGGGTCACTTGCTACACTAATTAGAATAAGCCAGCT
AGCTCTGTTGCCTAAATCTGCCCCTTACAAGGTAGAAAAAGTGTGCTCTT
TGTTCCTTTGGGGTCTCCTCTTGCCTGAGTGCTGAGGGGCCCCAACACGT
TTGGTCAATAAACCTCTTGCAGTTTGCAGTGATCTCTGTCTCAGGTCTTT
GTGAGTAAGGGTCTTTCAGTGGACTCCAACAAGGGTAAATCTAAACTCAA
AGGTAATCTGTGATTCAGTTTATCTCTGTTTGGTGATCACAAGTCTCTTC
CGAATGGAAAACACTGTAGTCTGATTTCCCAAAGGAAATGCCTTTTGCTG
TACCATTTTAGGGAAGTATATTCACAGGAAGCTCTGACCACTTTTGACCT
CTAAGGCTCTAGATAAGGCCTACACTCGCAGTAACCCAGTAACCCCACTT
CACCTTTTAATATACCGAAATGGAAGATAGGGTTTCCCTTTCCCTTGTTT
AATGAACCCAGAAAGTCCTTGTGCCCCTCTGGGCAAAAAATTGGTCGTTC
TTTCGGAACACCCCAGCGTTAACTTTTTAAGGGGCTGCGCTTTCTCCAAC
AAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l14.b1 MSMg01no372_l14.b1 CHROMAT_FILE:
MSMg01no372_l14.b1 PHD_FILE: MSMg01no372_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:32 2005
         (431 letters)



>mm_chr7_150835278_150836109
          Length = 832

 Score =  756 bits (391), Expect = 0.0
 Identities = 422/435 (97%), Gaps = 7/435 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttacttgctgtttataacaaatatgattctgttaataacgtcataggcatttaaaat 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttaacttgctgtttataacaaatatgattctgttaataacgtcataggcatttaaaat 441

                                                                       
Query: 61  tacgttatttatagaaaactagatattactgagcactgattgtggtgggaaggcaagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacgttatttatagaaaactagatattactgagcactgattgtggtgggaaggcaagagt 381

                                                                       
Query: 121 ggtggcgctggacccgcccacgagataaggcaaccacaca-gaaccaatcccctgaggag 179
           |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 380 ggtggcgctggacccgcccacgagataaggcaaccatacaggaaccaatccgctgaggag 321

                                                                       
Query: 180 aggcgtggccaccacagcagctcctcccagctgagcagcagcggcgtgcttgcactcggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggcgtggccaccacagcagctcctcccagctgagcagcagcggcgtgcttgcactcggc 261

                                                                       
Query: 240 catgtttggcttcttctgcagcttggtctccagtctgagtcgctggttcctttggcggcg 299
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 catgtttggcttcttctgcagcttggtgtccagtctgagtcgctggttcctttggcggcg 201

                                                                       
Query: 300 gctgctgctgctgctgctgctgct-----t-aatctgcccttgcaggtgagtagatatgg 353
           ||||||||||||||||||||||||     | |||||||||||||||||||||||||||||
Sbjct: 200 gctgctgctgctgctgctgctgctgctgctgaatctgcccttgcaggtgagtagatatgg 141

                                                                       
Query: 354 ccctgcggagctgagattcgctctgggcaccggatccccggactgcagaggaaagctact 413
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ccctgcggagctgagactcgctctgggcaccggatccccggactgcagaggaaagctact 81

                          
Query: 414 gccagcggtgaactg 428
           ||| |||||||||||
Sbjct: 80  gccggcggtgaactg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space:   347306
Effective search space used:   347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)