BAC Information

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BAC

Clone NameMSMg01-372O08
Chromosome7 (Build37)
Map Location 90,926,136 - 91,082,520
singlet/doubletdoublet
Overlap gene1700026D08Rik, Mesdc1, Mesdc2
Upstream geneEftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170
Downstream gene9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372O08.T7 (MSMg01no372_o08.b1)MSMg01-372O08.TJ (MSMg01no372_o08.g1)
ACCAG479053AG479054
length722762
length of high quality
(start - end)		527 (46 - 572)435 (73 - 507)
definitionCHROMAT_FILE: MSMg01no372_o08.b1 PHD_FILE: MSMg01no372_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:45 2005CHROMAT_FILE: MSMg01no372_o08.g1 PHD_FILE: MSMg01no372_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,926,136 - 90,926,659)(91,082,086 - 91,082,520)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTGTATCTGCCTCCCAGCACCTAGGGTTACAGGGCACATGCTC
CCTTATCTGTCTTTTACCTGCACAGGATTCTACCCAGTGAGACATCTCCA
TAGATACTCGGGATGCCATTCATATATCTCCTATTATATTCCTATATATA
GTCATGTGCATAGAAAAATAGCACATAAAGTGGGCGGTTCTCTAAGATTA
AATGAATTCTGATGGTTTTTATATCTGTACCTTAATGATTCTGAAAATGA
ATATATATTGTGTTTATAATTAGCATTTCCTGGAGACTGGGACTTGGCTG
TATACCTCATGCTAGCCTAGGACTTGTGGTCCTCTTGCTTCAGCCTCTGG
AATGTTGGATTACAGATGTGAGCCACCAAATTGGTTAAAGAAATATTACC
TTATAACCCTGACTCTTGTAAAATGAGTACTGTCAGAGGGAAAGGTGGCA
GCCCCTGGCATGTGAGCTGGTCTGGTACCCAAAGCCTCCTTGGTGAGCAG
AGTCCATTTTACAGAACTCCACCTCAGTTAAAATCACTATGATCATAACT
GGTCTGGACAGGACCAAGACCACACCCAGTCACATATGATTCTAACTAAC
TTGATCACGTGTCAATTCCGGATAATCCCCACTGACTGGGCAAGGATACT
TTTTCCCTCCTTCCTTCTTGTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGGTGCCACCTTATTCCACAGTGGT
GCTGGTATGCCCAATGGGTAGCATCAGGATATGCCAATGTGCTTCTGCTG
GGCCAATTGGCTCCTTGTGGGGATCTGAGAGTGGTTGGCTCCAGACCAGG
ATCTTTCAGCTTATGTTCACTCTGAGCAAATAGCTCCGATGCCCAGACGA
GTGAAAACTATCCATGTCCAATATTCTTCGGAGACATCAGGGTTTCTCTG
TGTTTCATGAATGAGATTGGTCCCCTTTCCTCCACAACCACAACCTTTCT
TTTTCAAAGAAGATTTGCTTCGGTCCCCTTTGTCCAGTGGTATTAAGGAG
CCTTAGTCCCAGAGTCTACTCTCCAGGTTGAGCCAACTCGCAGGGGGTCT
TTCCTACTAATGGATCTTGCAGCTGCTGGGATGTGTCTGTGGGACCATGC
CTCTTAAGACATAGTGTCTCCAGTTGCGAGTGTCAGAGAAAAGACCTCTT
CTGGTGAGATGAGTGTTAGGGTTTAGCTTTTTCCTTCTTCCTCCTTCTCT
CTCCTCTCCTTTTCCACCCCTTTTTTTTTCCCCCTCCTTTTCCTCTTGCT
TCTTCTCTCCCCCCCCCTTCTTCCCCCCTCCCTTCCCCCCCCTCCCTTAT
TCCCTCTTATTTTCCCCTCTCTTATCTCCTTTTCTTCCTCTTCTTNCTCT
TCTCCCGCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_o08.b1 MSMg01no372_o08.b1 CHROMAT_FILE:
MSMg01no372_o08.b1 PHD_FILE: MSMg01no372_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:45 2005
         (527 letters)



>mm_chr7_90925933_90926859
          Length = 927

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcctgtatctgcctcccagcacctagggttacagggcacatgctcccttatct 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctgcatctgcctcccagcacctagggttacagggcacatgctcccttatct 263

                                                                       
Query: 64  gtcttttacctgcacaggattctacccagtgagacatctccatagatactcgggatgcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtcttttacctgcacaggattctacccagtgagacatctccatagatactcgggatgcca 323

                                                                       
Query: 124 ttcatatatctcctattatattcctatatatagtcatgtgcatagaaaaatagcacataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcatatatctcctattatattcctatatatagtcatgtgcatagaaaaatagcacataa 383

                                                                       
Query: 184 agtgggcggttctctaagattaaatgaattctgatggtttttatatctgtaccttaatga 243
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgggcgcttctctaagattaaatgaattctgatggtttttatatctgtaccttaatga 443

                                                                       
Query: 244 ttctgaaaatgaatatatattgtgtttataattagcatttcctggagactgggacttggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctgaaaatgaatatatattgtgtttataattagcatttcctggagactgggacttggc 503

                                                                       
Query: 304 tgtatacctcatgctagcctaggacttgtggtcctcttgcttcagcctctggaatgttgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtatacctcatgctagcctaggacttgtggtcctcttgcttcagcctctggaatgttgg 563

                                                                       
Query: 364 attacagatgtgagccaccaaattggttaaagaaatattaccttataaccctgactcttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attacagatgtgagccaccaaattggttaaagaaatattaccttataaccctgactcttg 623

                                                                       
Query: 424 taaaatgagtactgtcagagggaaaggtggcagcccctggcatgtgagctggtctggtac 483
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 taaaatgagtactgtcagagggaaagggggcagcccctggcatgtgagctggtctggtac 683

                                                       
Query: 484 ccaaagcctccttggtgagcagagtccattttacagaactccac 527
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccaaagcctccttggtgagcagagtccattttacagaactccac 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_o08.g1 MSMg01no372_o08.g1 CHROMAT_FILE:
MSMg01no372_o08.g1 PHD_FILE: MSMg01no372_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:45 2005
         (435 letters)



>mm_chr7_91081886_91082720
          Length = 835

 Score =  841 bits (435), Expect = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggtgccaccttattccacagtggtgctggtatgcccaatgggtagcatcaggatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttttggtgccaccttattccacagtggtgctggtatgcccaatgggtagcatcaggatat 576

                                                                       
Query: 61  gccaatgtgcttctgctgggccaattggctccttgtggggatctgagagtggttggctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gccaatgtgcttctgctgggccaattggctccttgtggggatctgagagtggttggctcc 516

                                                                       
Query: 121 agaccaggatctttcagcttatgttcactctgagcaaatagctccgatgcccagacgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agaccaggatctttcagcttatgttcactctgagcaaatagctccgatgcccagacgagt 456

                                                                       
Query: 181 gaaaactatccatgtccaatattcttcggagacatcagggtttctctgtgtttcatgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaaaactatccatgtccaatattcttcggagacatcagggtttctctgtgtttcatgaat 396

                                                                       
Query: 241 gagattggtcccctttcctccacaaccacaacctttctttttcaaagaagatttgcttcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gagattggtcccctttcctccacaaccacaacctttctttttcaaagaagatttgcttcg 336

                                                                       
Query: 301 gtcccctttgtccagtggtattaaggagccttagtcccagagtctactctccaggttgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtcccctttgtccagtggtattaaggagccttagtcccagagtctactctccaggttgag 276

                                                                       
Query: 361 ccaactcgcagggggtctttcctactaatggatcttgcagctgctgggatgtgtctgtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccaactcgcagggggtctttcctactaatggatcttgcagctgctgggatgtgtctgtgg 216

                          
Query: 421 gaccatgcctcttaa 435
           |||||||||||||||
Sbjct: 215 gaccatgcctcttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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