BAC Information

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BAC

Clone NameMSMg01-373C15
Chromosome7 (Build37)
Map Location 76,654,302 - 76,712,893
singlet/doubletdoublet
Overlap genenone
Upstream geneEG384639, Arrdc4, LOC384741
Downstream geneEG665410, Nr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373C15.T7 (MSMg01no373_c15.b1)MSMg01-373C15.TJ (MSMg01no373_c15.g1)
ACCAG479258AG479259
length712701
length of high quality
(start - end)		557 (19 - 575)589 (58 - 646)
definitionCHROMAT_FILE: MSMg01no373_c15.b1 PHD_FILE: MSMg01no373_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:04 2005CHROMAT_FILE: MSMg01no373_c15.g1 PHD_FILE: MSMg01no373_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,712,379 - 76,712,893)(76,654,302 - 76,654,890)
sequence
CTCACTATTCCGAGAGGATCCGCGGAATTCAATTTTTCTCCATGTGTTCT
CCAAGCTAAACATTATTGCCTGACCTGACAAAGCACACCCATCTTTTCCA
AAACTATAAATATTATTATTTAAATGATATAGACCAAAAATTGTCCATGC
CAGGAAAATATTCATGCAAGTAAGATGAAGAAGTTGATGAGGAGAGTCTG
AGGGCAGTAATTTGTAATTTGAATGTGTGCTAGTGTGTGTGTTTGTGTGT
GTGCATGTGTGTGTGCATGAATGTGCATGTGTGCATATAGAAGTCTCTGT
GTGTGTCTATGTGTATATAATCATTTTTATTTTCTATTGCCACAAGCTCT
GAAAGTTTGATTTGAGGTCCAAATGAAGAGAAGAAATGAAGTGAAAATAA
TGAATTGGGTGGGAGAGAGTACAGGTAAAAAGAGCCTAGAAAAGGGATTC
TGATGGGAAACCAAATAAGAAAGCCATTCCAAAGCAGAAATTTGGTGAAA
AATTCCTCAAGTCCATAATGCCCATCTGAGCAAGGCATGGTGCATTATAC
CATGGTACAGCTATAAATTATTCATTCACAGNTCTGCATTGGTAGTGAAG
AAATGGCACCATTTTGACTCCTCACTGACTCTCTTGGGTTTCTTCATGGG
AAATGAGTGCCTCTCTCCTTTGAAGTATCTGCCCATTACTATGTGGGTAA
TACACAATGTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGGACAAATCCTATGCAGGGCACCATGCATACACTCTTGCCT
AAAATCCATGGTGATGCAGTAACCTTCCATTTTAATGTGAAAGGATCTCA
CACAAGCGCAAATAAACAAGTGAGAAAGAGGCATACCGTATTGGAATCCA
GCACCATTTACTCAGACCACCTTACTGGATTTTCCCACTTCCTCGTCTAA
GAATTTTACAGACTCAAAATTATTTCAGTAGAAAAATGGAGGTGGAAATG
GACATTAAGGGACTCATTTCTGTTTGAGGGTCTTTCATTCCCTAAGCATA
ATATATGTTCTTACTGATTAGGACACTGAAGCTGTTAGACGTTTGTGTAG
CACCTGTGCATTTAATTGTAATGTCAAACAAGAAGTGTCTGTGAATACTA
ATGATTTACAAGCCATAAAACTGTCCTTCAAAGTTTGTTCCATGTTAAAA
TGAGCTCTTCAAAAGCACCTCTTCTGTTTCTGGATATCACCTAATATGCT
GTAATATGAGCATACAGGATCTAAATGTTATTAACAGGCCTTATACATTT
TTACAGTTTGAGTTGGCCCCAAGAGTCCAATTGGTAGATTGTGGTTAAGC
TGTCAAAAAAAGTACTCATCGTCAAATACGAATTTTTTAAACTCTTATAA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_c15.b1 MSMg01no373_c15.b1 CHROMAT_FILE:
MSMg01no373_c15.b1 PHD_FILE: MSMg01no373_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:04 2005
         (557 letters)



>mm_chr7_76712379_76713335
          Length = 957

 Score =  980 bits (507), Expect = 0.0
 Identities = 513/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaatttttctccatgtgttctccaagctaaacattattgcctgacctgacaaagc 66
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcaatttttctccatgcgttctccaagctaaacattattgcctgacctgacaaagc 456

                                                                       
Query: 67  acacccatcttttccaaaactataaatattattatttaaatgatatagaccaaaaattgt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 acacccatcttttccaaaactataaatattattatttaaatgatatagaccaaaaattgt 396

                                                                       
Query: 127 ccatgccaggaaaatattcatgcaagtaagatgaagaagttgatgaggagagtctgaggg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccatgccaggaaaatattcatgcaagtaagatgaagaagttgatgaggagagtctgaggg 336

                                                                       
Query: 187 cagtaatttgtaatttgaatgtgtgctagtgtgtgtgtttgtgtgtgtgcatgtgtgtgt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagtaatttgtaatttgaatgtgtgctagtgtgtgtgtttgtgtgtgtgcatgtgtgtgt 276

                                                                       
Query: 247 gcatgaatgtgcatgtgtgcatatagaagtctctgtgtgtgtctatgtgtatataatcat 306
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcatgcatgtgcatgtgtgcatatagaagtctctgtgtgtgtctatgtgtatataatcat 216

                                                                       
Query: 307 ttttattttctattgccacaagctctgaaagtttgatttgaggtccaaatgaagagaaga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttttattttctattgccacaagctctgaaagtttgatttgaggtccaaatgaagagaaga 156

                                                                       
Query: 367 aatgaagtgaaaataatgaattgggtgggagagagtacaggtaaaaagagcctagaaaag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aatgaagtgaaaataatgaattgggtgggagagagtacaggtaaaaagagcctagaaaag 96

                                                                       
Query: 427 ggattctgatgggaaaccaaataagaaagccattccaaagcagaaatttggtgaaaaatt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ggattctgatgggaaaccaaataagaaagccattccaaagcagaaatttggtgaaaaatt 36

                                              
Query: 487 cctcaagtccataatgcccatctgagcaaggcatg 521
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  cctcaagtccataatgcccatctgagcaaggcatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_c15.g1 MSMg01no373_c15.g1 CHROMAT_FILE:
MSMg01no373_c15.g1 PHD_FILE: MSMg01no373_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:04 2005
         (589 letters)



>mm_chr7_76654102_76655090
          Length = 989

 Score = 1085 bits (561), Expect = 0.0
 Identities = 582/589 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggacaaatcctatgcagggcaccatgcatacactcttgcctaaaatccatggtgatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggacaaatcctatgcagggcaccatgcatacactcttgcctaaaatccatggtgatgc 260

                                                                       
Query: 61  agtaaccttccattttaatgtgaaaggatctcacacaagcgcaaataaacaagtgagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaccttccattttaatgtgaaaggatctcacacaagcgcaaataaacaagtgagaaa 320

                                                                       
Query: 121 gaggcataccgtattggaatccagcaccatttactcagaccaccttactggattttccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcataccgtattggaatccagcaccatttactcagaccaccttactggattttccca 380

                                                                       
Query: 181 cttcctcgtctaagaattttacagactcaaaattatttcagtagaaaaatggaggtggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctcgtctaagaattttacagactcaaaattatttcagtagaaaaatggaggtggaa 440

                                                                       
Query: 241 atggacattaagggactcatttctgtttgagggtctttcattccctaagcataatatatg 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggacaggaagggactcatttctgtttgagggtctttcattccctaagcataatatatg 500

                                                                       
Query: 301 ttcttactgattaggacactgaagctgttagacgtttgtgtagcacctgtgcatttaatt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttactgattaggacactgaagcagttagacgtttgtgtagcacctgtgcatttaatt 560

                                                                       
Query: 361 gtaatgtcaaacaagaagtgtctgtgaatactaatgatttacaagccataaaactgtcct 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gtaatgtcaaacaagaagtgtctgtgaatactaatgatttacaagtcataaaactgtcct 620

                                                                       
Query: 421 tcaaagtttgttccatgttaaaatgagctcttcaaaagcacctcttctgtttctggatat 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tcaaagtttgttccatgttaaaatgagctcttcaaaagcatctcttctgtttctggatat 680

                                                                       
Query: 481 cacctaatatgctgtaatatgagcatacaggatctaaatgttattaacaggccttataca 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 cacctaatacgctgtaatatgagcatacaggatctaaatgttattaacaagccttataca 740

                                                            
Query: 541 tttttacagtttgagttggccccaagagtccaattggtagattgtggtt 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttttacagtttgagttggccccaagagtccaattggtagattgtggtt 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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