BAC Information

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BAC

Clone NameMSMg01-373D02
Chromosome7 (Build37)
Map Location 121,176,940 - 121,177,451
singlet/doubletsinglet
Overlap geneSpon1
Upstream geneArntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneRras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D02.T7 (MSMg01no373_d02.b1)MSMg01-373D02.TJ (MSMg01no373_d02.g1)
ACCAG479280AG479281
length822722
length of high quality
(start - end)
---515 (56 - 570)
definitionCHROMAT_FILE: MSMg01no373_d02.b1 PHD_FILE: MSMg01no373_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:06 2005CHROMAT_FILE: MSMg01no373_d02.g1 PHD_FILE: MSMg01no373_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAAAAAAAAACAAAATCAAAAACGTTGGAACCCCGCTCACACGAGA
GACGACTGCCACCCACCTGCCGTGTGAGCGGGAGCGAAGAGGGAAACGAG
AATACAATCAACGCCAAATACAAAGTAACACGAAGCCGAATACAACAGCT
GAACGCACCGAGCGCTTATGAATTGCAGGTCACGAAGTAGGCAAGAAGAA
CCGGGACAACAAACAGAACAAGAAACCGAAGCACTAGGACTTGGCAGAAG
ACAGATAAAATTCGGAAGTGCGAAAATGCACACAGAAAGGTCAAAAAAAA
CGGCGGCACACTGAAAAAGTCAAAACCTTGACAACTCCCACAATGCAAAT
ACAAGGTCCGGAAACGCTACCGGCAGAAACATCACACCTCAACCGCTAAT
GAAGGAACATGTCGCACACGTACATCTATACCACGTCTCACTACATTACG
ACGGATTTACAGTACATATCTAAACGATCAAAGATCCAAAAACTACCAAG
CTGTGCAACGGAGTCAACGTTCACACAGCGATTCAACTTGATAAAGTACG
ATAAAATGGTGGAAAATTATTTCAAAATCTTTAGAAAAAGTAGTCAAAAA
CTTCGCCCAATTCGNNCCAGATGGTGAAAAGTTTTGGCCCCTCTCTNACC
CCGAAACAACCACGGGGAGGGATTTAAACTTTNGGCGGGGGGTGGGGTTT
TCCGACGCCACCTATAATTGNTATCCCCGGGGAGGACCCTTTGTCCCCAA
ACCCCCTTCAAATTTTTAGGGGAGCGTGGCCTTGANGACGGAAGGNGGNA
GNAATATNTTATCTCACGTCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACCTGTGTTCCATAGAAACATTTTCCTTGGGACAGTAAATTTACA
TAAGACATCACTGGCTATGTCTAATTGATTCCTGGTTTTTTTTGTTTGTG
GGGTTGATATAGGGTCTCACTGTGAAGCCCTGGCTAGCCTGGAACTTGCT
ATATAGACCAGATTTGCCTTGAACTCACAGAGATCAACATGCCTCTGCCA
CCAAAACACTGAGATGAAAAGCACACATCACTGTATGCAGCATATTACCA
TTTTACAATGGCCTTCTTAGTTGTAATAAGGCACAACTCTGGCCACTTTA
TGCACAAATGCATATCGATGTGCACACAAGCACACACATATTCCAAGGAT
TTCAGTTCAGACAAGCACAATTGCAGCACTGAGCCAATCTCTGTCTGGGG
TATTCTTTAGTGAGGCCCCATTAAACCTATTGTGACTATAATTGAATTTA
GTGATCCCATTAAATCAGTGGTGCCTCTGTTGAGAGAGACCTTGCACTCT
ACTGCATTGTCCTCACCTGNATCGGGCCATGACCACCGGCTGGGCCACAG
GAGATGCAGAACAGTAGCTAGCCCAATCGGCAAAGAGCCACTTCCTACTC
TAAACTGTTCCTTCTGAACCCAGGGTCTAATTCTATTCTATTCCCGCGGA
TATTGGTTGGTGGTTAATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d02.g1 MSMg01no373_d02.g1 CHROMAT_FILE:
MSMg01no373_d02.g1 PHD_FILE: MSMg01no373_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:06 2005
         (515 letters)



>mm_chr7_121176738_121177652
          Length = 915

 Score =  859 bits (444), Expect = 0.0
 Identities = 496/514 (96%), Gaps = 2/514 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgtgttccatagaaacattttccttgggacagtaaatttacataagacatcactggc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 acctgtgttccatagaagcattttccttgggacagtaaatttacataagacatcactggc 262

                                                                       
Query: 61  tatgtctaattgattcctggttttttttgtttgtggggttgatatagggtctcactgtga 120
           || ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 263 taagtctaatcgattcctggtttttt--gtttgtggggttgatatagggtctcactgtga 320

                                                                       
Query: 121 agccctggctagcctggaacttgctatatagaccagatttgccttgaactcacagagatc 180
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 agccctggctagcctggaactcgctatatagaccagacttgccttgaactcacagagatc 380

                                                                       
Query: 181 aacatgcctctgccaccaaaacactgagatgaaaagcacacatcactgtatgcagcatat 240
           ||| |||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||
Sbjct: 381 aacctgcctctgccaccaaagcactgagattaaaagcacacaccattgtatgcagcatat 440

                                                                       
Query: 241 taccattttacaatggccttcttagttgtaataaggcacaactctggccactttatgcac 300
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 441 taccattttacaatggccttcttagttgaaataaggcacaactctggccactctatgcac 500

                                                                       
Query: 301 aaatgcatatcgatgtgcacacaagcacacacatattccaaggatttcagttcagacaag 360
           ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 501 aaatgcatatcgatgtgcacataagcacacacacattccagggatttcagttcagacaag 560

                                                                       
Query: 361 cacaattgcagcactgagccaatctctgtctggggtattctttagtgaggccccattaaa 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaattgcagcactgagccaatctctgtctggggtattctttagtgaggccccattaaa 620

                                                                       
Query: 421 cctattgtgactataattgaatttagtgatcccattaaatcagtggtgcctctgttgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctattgtgactataattgaatttagtgatcccattaaatcagtggtgcctctgttgaga 680

                                             
Query: 481 gagaccttgcactctactgcattgtcctcacctg 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaccttgcactctactgcattgtcctcacctg 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)