BAC Information

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BAC

Clone NameMSMg01-373D07
Chromosome7 (Build37)
Map Location 147,455,653 - 147,456,216
singlet/doubletsinglet
Overlap gene5830411N06Rik
Upstream geneInpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik
Downstream geneEG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D07.T7 (MSMg01no373_d07.b1)MSMg01-373D07.TJ (MSMg01no373_d07.g1)
ACCAG479290AG479291
length737736
length of high quality
(start - end)		570 (17 - 586)485 (58 - 542)
definitionCHROMAT_FILE: MSMg01no373_d07.b1 PHD_FILE: MSMg01no373_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:07 2005CHROMAT_FILE: MSMg01no373_d07.g1 PHD_FILE: MSMg01no373_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATATTCAGAGGATCCGCGGAATTCTTTCCCTTTGACAATAGATT
TAACTCATTCCCATCTAAAGTAACTGCTCACTAAGCATTGATATGTCTGC
TGTTTTGCTGTCTATTTCTGCATGTCTTACAAGTTTTAAACCCTTTTTAT
TTCTTTCATAATTGCATTTTGTGTGTAATTTTGTGTGATTTTTAAAGACT
ATGTAGTTTTAGAAATTGACTTTTCATCATATTCCAGTTTTACTTATTTT
TATTATTTAAAAGTTATTTAATTGATAATCAAGATTATATGTATTTTTTG
GTATACTATGTAGCTTTTTAAATACATATATATGTGGTATTGTGTTCAAA
TTTGATAATCATATGTATTTAATCAGAAGCATGTCATTTTCTTTTGGTGA
ATGCATTCAAAAATTGTTCCTAGGCTTCTTTGGAAACATATGATACATTA
TATATGGTCTTCTTATTGTCCCGTAGAATAGCAACTATTTTTCTCATTAA
ATGCAACTTAGTGCCCATTGATCAACTTTTCTACATCTATTCTTCTCTCC
TGCCCTTTCCAGCCTTTGGCACACAATGCTAAGATTAAGTTCAACGAGAT
AATTTCTCATACTCTGTGTATGAATCATACCCCCCGTGTTTGTCTTTCCC
TGCATGTTTCTTTCACTTAACAAAAGGGGCCCCAGCTCCCTGAAATGCTT
GTTGGAATGACCGAGAATTCTTGATCTCCTTGGTAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCAGCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
TGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGTG
CATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCCCAA
AGAAACTCCCACAATATGTACTCACTGATAAGGGGAATTTAACCCCATAC
TTAGATATCCTAGATATAAAATAAATTTGGCGGACACTTGTTATCCCTTA
TTAATTAAAAATGGAGTGGTGGCCCCTTTTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d07.b1 MSMg01no373_d07.b1 CHROMAT_FILE:
MSMg01no373_d07.b1 PHD_FILE: MSMg01no373_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:07 2005
         (570 letters)



>mm_chr7_147455446_147456415
          Length = 970

 Score = 1075 bits (556), Expect = 0.0
 Identities = 562/564 (99%), Gaps = 1/564 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattctttccctttgacaatagatttaactcattcccatctaaagtaactgctcacta 67
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattctttccctttgataatagatttaactcattcccatctaaagtaactgctcacta 267

                                                                       
Query: 68  agcattgatatgtctgctgttttgctgtctatttctgcatgtcttacaagttttaaaccc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agcattgatatgtctgctgttttgctgtctatttctgcatgtcttacaagttttaaaccc 327

                                                                       
Query: 128 tttttatttctttcataattgcattttgtgtgtaattttgtgtgatttttaaagactatg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttttatttctttcataattgcattttgtgtgtaattttgtgtgatttttaaagactatg 387

                                                                       
Query: 188 tagttttagaaattgacttttcatcatattccagttttacttatttttattatttaaaag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tagttttagaaattgacttttcatcatattccagttttacttatttttattatttaaaag 447

                                                                       
Query: 248 ttatttaattgataatcaagattatatgtatttttt-ggtatactatgtagctttttaaa 306
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 ttatttaattgataatcaagattatatgtatttttttggtatactatgtagctttttaaa 507

                                                                       
Query: 307 tacatatatatgtggtattgtgttcaaatttgataatcatatgtatttaatcagaagcat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tacatatatatgtggtattgtgttcaaatttgataatcatatgtatttaatcagaagcat 567

                                                                       
Query: 367 gtcattttcttttggtgaatgcattcaaaaattgttcctaggcttctttggaaacatatg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtcattttcttttggtgaatgcattcaaaaattgttcctaggcttctttggaaacatatg 627

                                                                       
Query: 427 atacattatatatggtcttcttattgtcccgtagaatagcaactatttttctcattaaat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atacattatatatggtcttcttattgtcccgtagaatagcaactatttttctcattaaat 687

                                                                       
Query: 487 gcaacttagtgcccattgatcaacttttctacatctattcttctctcctgccctttccag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gcaacttagtgcccattgatcaacttttctacatctattcttctctcctgccctttccag 747

                                   
Query: 547 cctttggcacacaatgctaagatt 570
           ||||||||||||||||||||||||
Sbjct: 748 cctttggcacacaatgctaagatt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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