Query= MSMg01no373_d20.b1 MSMg01no373_d20.b1 CHROMAT_FILE:
MSMg01no373_d20.b1 PHD_FILE: MSMg01no373_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:09 2005
(490 letters)
>mm_chr7_99861090_99861971
Length = 882
Score = 835 bits (432), Expect = 0.0
Identities = 473/490 (96%), Gaps = 8/490 (1%)
Strand = Plus / Minus
Query: 1 gctacatagcgaggcattgtgtgtacacctagaaatgtaccactatagtttagttttagc 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 606 gctacatagcgagacattgtgtgtacacctagaaatgaaccactatagtttagttttagc 547
Query: 61 ttatttgtacactgtaacagtgaaataatagatacattattttgggtttgatgttgttag 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 ttatttgtacactgtaacagtgaaataatagatacattattttgagtttgatgttgttag 487
Query: 121 cacatgaagtttatttcttcactgtatagagttctgttataaagatattaatttagttat 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cacatgaagtttatttcttcattgtatagagttctgttataaagatattaatttagttat 427
Query: 181 tcattttatttagttattcatgttaatgtttaggttttctcacttgtgaaaaatgttgaa 240
|||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 426 tcattttatt--gt-----atgttaatgtttaggttttctcacttgtgaaaaatgctgaa 374
Query: 241 tgctgttataattgtacttttataaactttattatgaaaaaaaccttgaaaataaataca 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 373 tgctgttataattgtacttttataaactttattatgaaaagaaccttgaaaataaataca 314
Query: 301 aacatcacagacacacaaatcaaccagacccaaagtctacaccaaccaataagcttctgt 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 313 aacatcacagacacacaaatcaaccagacccaaagtctacacaaaccaataagc-tctgt 255
Query: 361 acagttaaaataagaagctaggggctggagagatggctcagtcctggctacccccacaca 420
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 254 acagttaaaataagaagctaggggttggagagatggctcagtcctggctacccctacaca 195
Query: 421 ggttcttgctgtataactagggtggcctacagcttactatgtagaccaggctagccttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggttcttgctgtataactagggtggcctacagcttactatgtagaccaggctagccttga 135
Query: 481 actcacagag 490
||||||||||
Sbjct: 134 actcacagag 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 882
Length adjustment: 10
Effective length of query: 480
Effective length of database: 872
Effective search space: 418560
Effective search space used: 418560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_d20.g1 MSMg01no373_d20.g1 CHROMAT_FILE:
MSMg01no373_d20.g1 PHD_FILE: MSMg01no373_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:10 2005
(398 letters)
>mm_chr7_99695529_99696326
Length = 798
Score = 739 bits (382), Expect = 0.0
Identities = 394/398 (98%)
Strand = Plus / Plus
Query: 1 tagttctcctctgtaatgttctaagaaatttaaggagtctagataattatttggataaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagttctcctctgtaatgttctaagaaatttaaggagtctagataattatttggataaac 260
Query: 61 tgaaaccaagaagactaatgtattagagtctcattaccatgatgcatatctgagagaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaccaagaagactaatgtattagagtctcattaccatgatgcatatctgagagaact 320
Query: 121 aatttggaaggaggagggatttatgtggactcgtggtttcagtgcatggtcagccagccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttggaaggaggagggatttatgtggactcgtggtttcagtgcatggtcagccagccc 380
Query: 181 tgccatttccaggctgtggtgagggagaacatcatcctagaagaatatgatagaccaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccatttccaggctgtggtgagggagaacatcatcctagaagaatatgatagaccaaag 440
Query: 241 ctgctcactgtttgcagccagaaagcagagagagacagacgggaagaggggagagaaata 300
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ctgctcactgcaagcagccagaaagcagagagagacagacaggaagaggggagagaaata 500
Query: 301 taaagcctcaagcacatgcctccagtgagtcccttcctccaacttggtttcacctactaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagcctcaagcacatgcctccagtgagtcccttcctccaacttggtttcacctactaa 560
Query: 361 aaatttacagcaccttctaaaacaaaaccatgaagggg 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatttacagcaccttctaaaacaaaaccatgaagggg 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
