BAC Information

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BAC

Clone NameMSMg01-373E10
Chromosome7 (Build37)
Map Location 102,373,474 - 102,373,984
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666816, LOC100040132
Downstream geneLOC666823, Frda-ps, EG666836, Odz4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373E10.T7 (MSMg01no373_e10.b1)MSMg01-373E10.TJ (MSMg01no373_e10.g1)
ACCAG479344AG479345
length722769
length of high quality
(start - end)		518 (18 - 535)330 (78 - 407)
definitionCHROMAT_FILE: MSMg01no373_e10.b1 PHD_FILE: MSMg01no373_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:12 2005CHROMAT_FILE: MSMg01no373_e10.g1 PHD_FILE: MSMg01no373_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTATTTCCAGAGGATCCGCGGAATTCTCTATCCTGCGCCATAAATA
GCAGTATGAAATTACATTTGTGACTAAATATCTACTTAGTCTATCTTTAG
ATTAATTTTTACCATCTGCTTTTGCCAGATGTAGATTTTTCTCAAAAAAA
ATGTCCAAGAAAACACATAAATTAGGAAAAACATATTTGTGGCTAGTCTT
CTTAAAAAGGCACAGTGTTTGGTATTCTGCTCTTTGTAAATAGGAATTCA
ACTTTGCCATCCAGTCATCCAACCAACAAAATTAGGTATGAATTACCATT
ATTCTTTGTTAGAAAACAGAAACCATTGATGTTTATGTAAATGGCGATCC
AAGGAGGCAAATCAGGAACTTGCATATTGCATTTCAGTGTTGAGTAAACC
ACTTACCCTCTTAGCACAAGCTTAGGAAGCTGACCTTTGCTCCACTTAGT
TGCTATTGCATTAGCACAGCCTCTTCTAAACAATAGTGTCAAACAATCTA
AAACACTTCTTACCAACCCAACACACATGCAGAANAGGCAAAGAAAATCT
ATTGAAAGAAAGGACAAGACTCTTCTAAAATTAAAGAAATGTTTACTCAG
AATACCAGGCCAGCTAAACTTATGAAGAACTACTCTGTACTTAGCTCAAG
GACACACAAACTTGCCTGGTGGTTCATCTTTAAATCCACACTTAAATTAA
TTCTGGGTCTGAAAAAAATTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGCAAGACAAAAATTTTCAA
TCAAGTTATGAAACTGTTTTCTTTTCTTTTCTTTTTTCTTTTTTTACTTT
TTCCAATTTTTAATTAGGTATTTTCTTCATTTGCATTTCAAATGCTAGCC
CAAAAGTCCCCTATACCCTCCCCCCCCCCCTGCTCCCCTACCCACCCACT
CTAGTGGTTTACTTCAGTAGATAGTAAAGGATTTTAAAATGGGGATTAAT
CTCATTATCAACTCTGTAACTTATTTCAGTTAATTCAGCTCTCTTGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTATT
GTGTGTGTGCGAGATGCCCCAGATACTGAGAAAAGAGACATCTTTAAAGC
ATGCACAACTAAGCACTTTTCTTTTGCACTTGAATTGTGGTTACTTTTTG
ATATCTCCCTCTAAGTTTATGTGCTCAAGCACCTCCTCCCCCGGTTTGTC
TGATGTTGAAAGGCTTACTGCCCAAAGACTTTGGTAACCGAATTCACTGT
TGATTCACTTTTTCTATCAATAATTTTACTCCTTTTTTTCTCATTCCCTC
TACACTCCCTCAGGTATCAAAATATCATCGTCCAACTAAAGCCCTTTATT
CGCATAACTATTGTTATCCCATCTCCACAGAGTCAGTTGTTCCAATGTTC
TTTCCAGATACCTCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_e10.b1 MSMg01no373_e10.b1 CHROMAT_FILE:
MSMg01no373_e10.b1 PHD_FILE: MSMg01no373_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:12 2005
         (518 letters)



>mm_chr7_102373267_102374185
          Length = 919

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%), Gaps = 1/511 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctctatcctgcgccataaatagcagtatgaaattacatttgtgactaaatatcta 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctctatcctgtgccataaatagcagtatgaaattacatttgtgactaaatatcta 267

                                                                       
Query: 68  cttagtctatctttagattaatttttaccatctgcttttgccagatgtagatttttctca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttagtctatctttagattaatttttaccatctgcttttgccagatgtagatttttctca 327

                                                                       
Query: 128 aaaaaaa-tgtccaagaaaacacataaattaggaaaaacatatttgtggctagtcttctt 186
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaaaaaaatgtccaagaaaacacataaattaggaaaaacatatttgtggctagtcttctt 387

                                                                       
Query: 187 aaaaaggcacagtgtttggtattctgctctttgtaaataggaattcaactttgccatcca 246
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taaaaggcacagtgtttggtattctgctctttgtaaataggaattcaactttgccatcca 447

                                                                       
Query: 247 gtcatccaaccaacaaaattaggtatgaattaccattattctttgttagaaaacagaaac 306
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcacccaaccaacaaaattaggtatgaattaccattattctttgttagaaaacagaaac 507

                                                                       
Query: 307 cattgatgtttatgtaaatggcgatccaaggaggcaaatcaggaacttgcatattgcatt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cattgatgtttatgtaaatggcgatccaaggaggcaaatcaggaacttgcatattgcatt 567

                                                                       
Query: 367 tcagtgttgagtaaaccacttaccctcttagcacaagcttaggaagctgacctttgctcc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcagtgttgagtaaaccacttaccctcttagcacaagcttaggaagctgacctttgctcc 627

                                                                       
Query: 427 acttagttgctattgcattagcacagcctcttctaaacaatagtgtcaaacaatctaaaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acttagttgctattgcattagcacagcctcttctaaacaatagtgtcaaacaatctaaaa 687

                                          
Query: 487 cacttcttaccaacccaacacacatgcagaa 517
           |||||||||||||||||||||||||||||||
Sbjct: 688 cacttcttaccaacccaacacacatgcagaa 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space:   461772
Effective search space used:   461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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