Query= MSMg01no373_j19.b1 MSMg01no373_j19.b1 CHROMAT_FILE:
MSMg01no373_j19.b1 PHD_FILE: MSMg01no373_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:36 2005
(589 letters)
>mm_chr7_78566607_78567594
Length = 988
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttgtatttcaatctttgcattgaaccataatttttcttaacttcttttaaca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttgtattttaatctttgcattgaaccataatttttcttaacttcttttaaca 264
Query: 65 cgtcatgtgagaaagggacctaactatgttcccagtcttcagatatgtatccattgcctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgtcatgtgagaaagggacctaactatgttcccagtcttcagatatgtatccattgcctg 324
Query: 125 ttcttaggcaacttttctcaattgttgtggaaccttatgttgtgatacttaggtgatgtg 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ttcttaggcaacttttctcaattgttgtggaaccttatgttgtgatgcttaggtgatgtg 384
Query: 185 ttcctctagcatttgtatagccaccaagagtccttcttaacagtattaaataacattgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcctctagcatttgtatagccaccaagagtccttcttaacagtattaaataacattgag 444
Query: 245 acttaagcatgaaatcacttttgattttaaaaaatagtatatactatctatgttagggca 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 acttaagcatgaaatcacttttgattttaaaaaa-agtatatactatctatgttagggca 503
Query: 305 aggttggctttgagtctactaaatctaaatccattttcaagatatgaacagtatggaaac 364
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 504 aggttggctttgagtctactaaatctaaacccattttcaagatatgaacggtatggaaac 563
Query: 365 ttacaaattatcgtgcttaaacacggggtctttggtaggtgactaagatcaagttagacc 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttacaaattatcatgcttaaacacggggtctttggtaggtgactaagatcaagttagacc 623
Query: 425 atgaacttaatcactggtgtccctacaaaaggagggagagagagtagaggcgacacacac 484
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 624 atgaacttaatcactggtgtccctacaaaaggaggaagagagaatagaggcgacacacac 683
Query: 485 ttctctttgtcttctgcagtcagtgccttctgctttcatgcgttctactagaagaacacc 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 ttctctttgtcttctgcagtcagtgccttctgctttcatgcgttctactagaagaacaac 743
Query: 545 gctggtatttgtttcttttttaactgggcttccagaattgtgaga 589
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gctggtatttgtttcttttttaactgggcttccagaattgtgaga 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_j19.g1 MSMg01no373_j19.g1 CHROMAT_FILE:
MSMg01no373_j19.g1 PHD_FILE: MSMg01no373_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:36 2005
(284 letters)
>mm_chr7_78759267_78759950
Length = 684
Score = 451 bits (233), Expect = e-131
Identities = 263/279 (94%), Gaps = 14/279 (5%)
Strand = Plus / Minus
Query: 1 cttatagaaagactatggtgtggttcagagagcccatctccatctttaggaattcctcaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttacagaaagactatggtgtggttcagagagcccatctccatctttaggaattcctcaa 269
Query: 61 cccacacagaccagcactcagccttctcacagcaatgaattcccaatggggtctggcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cccacacagaccagcactcagccttctcacagcaatgaattcccaatggggtctggcaga 209
Query: 121 gcctttttcctctccccttccctcccctcccctctccctctctctccctctccctctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gcctttttcctctccccttccctcccctcccctctccctctctctccctctccctctccc 149
Query: 181 tctccctctccctc--cctctccctctccctctccctctccctctccc-ctccc-ctccc 236
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 148 tctccctctccctctccctctccctctccctctccctctccctctccctctccctctccc 89
Query: 237 ctcccctccttttttttctactcttctcctctcctccct 275
|||| ||| || |||||||||||||||||||
Sbjct: 88 ctcctctc--------tc--ctcttctcctctcctccct 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
