BAC Information

Click to search

BAC

Clone NameMSMg01-373K02
Chromosome7 (Build37)
Map Location 121,161,177 - 121,161,488
singlet/doubletsinglet
Overlap geneSpon1
Upstream geneArntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneRras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373K02.T7 (MSMg01no373_k02.b1)MSMg01-373K02.TJ (MSMg01no373_k02.g1)
ACCAG479615AG479616
length813886
length of high quality
(start - end)
278 (39 - 316)303 (157 - 459)
definitionCHROMAT_FILE: MSMg01no373_k02.b1 PHD_FILE: MSMg01no373_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:38 2005CHROMAT_FILE: MSMg01no373_k02.g1 PHD_FILE: MSMg01no373_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTCAGAAGATCCGCGGAATTCTGTACCCTTTACAATTATTCTTAAAAA
GTGAAGACATAAAGACGTTCTCAGACAAATAAAAACTGAGAGGATTTGTT
TCGAGTTAGAACTGAATTTCTAAAAATGGTTTTTAGAAGGTGTTCAGAGA
GAAGACAAATGATCTAGCTCAGAAGAACATCAGAAAAGGAATGTGAAGAC
AAAAAAAACCCCTCTTTTTCTTAATTGATCTAACAGGTGACAACTCGTTC
AGAACAAAATCAGCAGTGTACTCGTGTGTGAGTGTGTGTGTGTTCGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTTCTTTTTTTTTTCTCCCGCTCTTTG
TCCAGGAGGGTATTTTCTTTTTTGTTCGTTTTTTTTCTCTTCCCTCCATG
CCTATTTGTTCAAGACGACAACCTTTTTCACTTTTCTCTCTCTTCTTCCC
ACATTTTTTCCTATTTTTTTTACTTTTTTCACACATTTTGTCAAATTTTT
ATTCATTTTTTTCATCACTTTTTCACTTAATTTTACCTCCTATCTTTTCA
CCTCTTTTTTCCACTTCTTCTACGANCTTTTACATTCTTTTATACCATCC
ATTCTATCTCATAAATTCACCCTGTTTACTAACGTTTCGCATCATCTTAT
GTCCTCTTACTTTTTATTCCATTTTTACACATTTTTTAAACCATTTTTTT
TCAACGATCGTGTTGTATTTCTTTCGTATTTTANCCACATTGTGTAACAT
TATTGTTACCAAATTTTGTACAAACTTCTTCTACTACCGTTTTCCTATCA
CCTTGTCCCTGCN
GAGGGGATGAGCNAGGNAGAGGAGGNAGGAGAGAGAGAGGGGGAGGAGGA
GAGTAGGAGNNGGNNGGGTGGCGGGAGGAGTCGATGATAGXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTCTCAGTACCCGCTGAGGTACCTGGGCTCTTGTGGATGTTGAT
TGGGAAAGACACCCCTCCCTTCCTGAATGCACATTTTGGGGAATAGAAAG
ATGCTAAGAAGAGGGAACACAGCAGGTCTGGATTCCTAACAGATCACCTA
TAACAGCATAGTTGACGAATTGGATTATGGGAAACTATGGAATGCGCTGA
AGCAGGTTAGGAAGGGAAGGTTGGTGCTCGCTTGACTAGCTGGGGGGGGG
GGCAGTTAATAACCGGCTTTCGGAAGAGGGAAGAGACCGCGCATGGTTTT
GTGAGCCACTGCACCTCAGATGTTTTCCCGCACAAAGAGGAGTAGAGTTT
CTTGTTTGTTGGTGATTTTTCTTTTTTAAATAGTATCTTACTGTATAGCC
CCACTTAACCTAGAACTTAGCTACGTAGACCATGCTGGCTTCAAACTCAT
AGAGAACCATCTGTTTTCTGCCTCCCAAGTTGTTGGACACTTAAGGCACG
CTCCTAACCCTTATTGTCACATGTTATTATTACGTGTGATATACACATGT
GTATTAATTTCTTTTTTTTGGGATATCTTATGAATTTTTATTTCATCCTT
AATGGTGTCTTTTTCTATAGTGCTTCGGGCCTTTTCTCTCCACCATCTGA
AATCCGCCACTACTTGATTATTTTCCTTCTCTTCTTTATTTATCATTTTT
GCGCCTCTTGTCATTATTCCGTATGACTTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_k02.g1 MSMg01no373_k02.g1 CHROMAT_FILE:
MSMg01no373_k02.g1 PHD_FILE: MSMg01no373_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:38 2005
         (303 letters)



>mm_chr7_121161043_121161745
          Length = 703

 Score =  489 bits (253), Expect = e-143
 Identities = 294/313 (93%), Gaps = 11/313 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctcagtacccgctgaggtacctgggctcttgtggatgttgattgggaaagacacccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctctcagtacccgctgaggtacctgggctcttgtggatgttgattgggaaagacacccct 387

                                                                       
Query: 61  cccttcctgaatgcacattttggggaatagaaagatgctaagaagagggaacacagcagg 120
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 386 cccttcctgaatgcacattttgggg-ataggaagatgctaagaagagggaacacagcagg 328

                                                                       
Query: 121 tctggattcctaacagatcacctataacagcatagttgacgaattggattatgggaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctggattcctaacagatcacctataacagcatagttgacgaattggattatgggaaact 268

                                                                       
Query: 181 atggaatgcgctgaagcaggttaggaagggaaggttggtgctcgcttgactagctggggg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 267 atggaatgcgctgaagcaggttaggaaggaaaggttggtgctcgcttgactagctggggg 208

                                                                       
Query: 241 -gggggg---------cagttaataaccggctttcggaagagggaagagaccgcgcatgg 290
            ||||||         ||| |||| ||||||||||||||||| || ||||||||||| ||
Sbjct: 207 tggggggggggggagccaggtaatgaccggctttcggaagagtgaggagaccgcgcaagg 148

                        
Query: 291 ttttgtgagccac 303
            ||||||||||||
Sbjct: 147 ctttgtgagccac 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)