BAC Information

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BAC

Clone NameMSMg01-373K07
Chromosome7 (Build37)
Map Location 122,250,365 - 122,250,949
singlet/doubletsinglet
Overlap genenone
Upstream geneRras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373K07.T7 (MSMg01no373_k07.b1)MSMg01-373K07.TJ (MSMg01no373_k07.g1)
ACCAG479625AG479626
length725745
length of high quality
(start - end)
586 (49 - 634)410 (79 - 488)
definitionCHROMAT_FILE: MSMg01no373_k07.b1 PHD_FILE: MSMg01no373_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:39 2005CHROMAT_FILE: MSMg01no373_k07.g1 PHD_FILE: MSMg01no373_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATATTCAGAGGATCCGCGGAATTCTTTATACTTTCCGCATCT
TAAATCTCAGTTGGCTATTAGGCCAGTAACTGCCTCCATTCCATAGTTTG
ATTTTTCCCATTGTTTATAGGGTACTTTATTAAATGACCATTTATACCTT
TTAATTTAGATAAATGTATGATCATTTTCTTTATGGCTTAATGCTTTTGA
TGCCTTTATGAAGAAAACATGTCTTATTTCACTGTTAAATATATTTCCTG
CTCTTCTCTAGAGTTTAAAGCATGAATTTTCATTTGTTTGTTTGTTTGTT
TATTGGCTTCTACAAAAATCTACTGTTAGCATTTGTGTCTGGCATAAGCT
AGAATCTTCCTTTATTATTTTTTTAATCAGATAACCAATATTCTAAGTGT
CATCACTTCTGTCAAACATCAGGTTTCCACACATTTGCAGTCATCTCTGT
TACTGATCTATTGCATTGGCCAGTCAGCCTATTATAACTGTATAATTAAT
ATTAATAACTAATGAGCTCCTTTACTCTATTTTGCAGAATTGTCTTATTA
TTTCTAATCATTTCTTTGAATTTGCATATGACAAAATGAAAGCTGTTGAG
GAAAACACTTCATGAACTTTATTGCACCTCTACATGTACCCATACCACAA
TGGTGATACAGAATGTTCCCATCTCTCCAGAATGTTCTCTTGAGTCCCTT
GTGGTAAAACCCCCATGATGGTTAT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACTATAGAACTACCTATTG
CACAAGTGTTTTAAGAACATGTATTAGATGACCCACAGAATCAACTAGGG
GCTCATAGGGGCTCACAAAGACTGAGGTGATAATTACAGACCATCTTGGG
TCTGAGCTAGGTCCTCTGCATATATGTTATGATTGCATAGCTTGGTGTTA
TTGAGGGACCCGTAAGAGTGGGACTGGGTGTATCTCTGACTCTTTTGCAT
GTGCTTGGGATCTTTTTATTCCTACTGTGTCACCTTGTCTACTCTTGATG
TGACAACTTACTATAGTTTGTTTTGCCACATTCAGTTGAAATCCTTGGGA
TGCCTTCTTTTTTTTTTCTTTTTTCTTTTTTTTTTTAAAGGGAAACTAGG
AGGAGTTCGTCTAGGGGAGAGGGGATGTGGGGATAGACAGGTAGGAGTGT
TGATATGAAATTCTGGTTCATGTTGTTTCTTATATAATGACTACTTTCAC
CTTCATCTTTTGACCTTACCACTTTCTCCTCTTCAAACTTCCTTGCTTAT
TTCCTTTCCTTTCTTTTTATTATCTCAATTTTTTCTCTCCACTTTGTATT
TTTTGCTCATTTTTCTTTGATCTTTTCTCCTTTTCATATTTTCCTCCTCT
TCTTGTACCTGTCTTCGTTCTTTGAATCTTTTCGAATTCTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_k07.b1 MSMg01no373_k07.b1 CHROMAT_FILE:
MSMg01no373_k07.b1 PHD_FILE: MSMg01no373_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:39 2005
         (586 letters)



>mm_chr7_122250165_122251149
          Length = 985

 Score = 1071 bits (554), Expect = 0.0
 Identities = 578/586 (98%), Gaps = 1/586 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaaatctcagttggctattaggccagtaactgcctccattccatagtttgatttttcc 60
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||
Sbjct: 201 cttaaatctcagttggctattaggccaataaccgcctccattccatagtttgattttgcc 260

                                                                       
Query: 61  cattgtttatagggtactttattaaatgaccatttataccttttaatttagataaatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattgtttatagggtactttattaaatgaccatttataccttttaatttagataaatgta 320

                                                                       
Query: 121 tgatcattttctttatggcttaatgcttttgatgcctttatgaagaaaacatgtcttatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgatcattttctttatggcttaatgcttttgatgcctttatgaagaaaacatgtcttact 380

                                                                       
Query: 181 tcactgttaaatatatttcctgctcttctctagagtttaaagcatgaattttcatttgtt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcactgttaaatatatttcctgttcttctctagagtttaaagcatgaattttcatttgtt 440

                                                                       
Query: 241 tgtttgtttgtttattggcttctacaaaaatctactgttagcatttgtgtctggcataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttgtttgtttattggcttctacaaaaatctactgttagcatttgtgtctggcataag 500

                                                                       
Query: 301 ctagaatcttcctttattatttttttaatcagataaccaatattctaagtgtcatcactt 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ctagaatcttcctttattattttttta-tcagataaccaatattctaagtgtcatcactt 559

                                                                       
Query: 361 ctgtcaaacatcaggtttccacacatttgcagtcatctctgttactgatctattgcattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgtcaaacatcaggtttccacacatttgcagtcatctctgttactgatctattgcattg 619

                                                                       
Query: 421 gccagtcagcctattataactgtataattaatattaataactaatgagctcctttactct 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accagtcagcctattataactgtataattaatattaataactaatgagctcctttactct 679

                                                                       
Query: 481 attttgcagaattgtcttattatttctaatcatttctttgaatttgcatatgacaaaatg 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 attttgcagaattgtcttattatttctaatcatttctctgaatttgcatatgacaaaatg 739

                                                         
Query: 541 aaagctgttgaggaaaacacttcatgaactttattgcacctctaca 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaagctgttgaggaaaacacttcatgaactttattgcacctctaca 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space:   561600
Effective search space used:   561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)