BAC Information

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BAC

Clone NameMSMg01-375B01
Chromosome7 (Build37)
Map Location 59,692,658 - 59,692,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865, LOC100040718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375B01.T7 (MSMg01no375_b01.b1)MSMg01-375B01.TJ (MSMg01no375_b01.g1)
ACCAG480710AG480711
length741768
length of high quality
(start - end)
508 (53 - 560)305 (85 - 389)
definitionCHROMAT_FILE: MSMg01no375_b01.b1 PHD_FILE: MSMg01no375_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:31 2005CHROMAT_FILE: MSMg01no375_b01.g1 PHD_FILE: MSMg01no375_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTCAATTAGTCCTCATGTCACNTATACGACTCACTATATTCAGAGG
ATCCGCGGAATTCTTTGTTCTTTTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCATTTCTCGATCTTACAGAGCAAGCCAT
TGCTGTTCTGTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGT
TCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATC
GATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGT
TGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAG
ATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATT
CCATTGGTCCACTTGTCTGTCTTCTATACCAGTACCATGCAGTTTTTTAT
TCTATTTGCCCTGTAACAAAGTTTTAAGGGTATGCATTGGGGATTCCCCC
CAGAGGCGCCTCTTTTACCCTGAAAAAAAGTTTTTTGCTTN
CCCATAACTCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCCATAAACCCCT
GAATCTCTCCTTAGATGGGAGATAAAAATCTATTTGCTTTAACTATGAAT
GTGAATACAGAATGCATAACATTTGCAATGCTGTGATGAATAATTTAAAA
AACAACACAGTAAAGCCACAAAGCATAAATAAGTGATGTGTAAGTATTTA
TGAGTTTTTTAAGACAAAATAATGTGTTAGGGAGATTGCCTTCCTAAATA
AAAGCAAAAATAATGAGATGATGAAAGCAAAACTGTATGTTACTTTGGGA
ATTTGCTCTTTAATTGTTTTTCTCTGCGTGATGTGAATGATATCATGAAC
TCTGATGTGCTTCTCCACAGTCGTGCCCAAATAAAGCAAGATTACAAAAA
CACGTAGGTTTAGACGCAAATGGGCTTGTTTAGTTTTGCATAAAAATTAT
ATTATACCAGAAGGTGATTAACGAACATAAAAGTAGCAAGACATTTAGTA
ATCCGTTGGGACAGGTCTTCTAAAACCTGTTATGTGTATCCGACTCATGT
AATCCTTAANAATTAACCTCAGTGGAAAAAAAATATCCAACTTGTCTCCA
GGTTAACCAGGCGACAAAAATAATACGAAGCATTAAAAGGGTGGGGGAAA
ATTTTTTACCTTCGTTTGGGGTTTTTGGCCCCCTGTCCTTCTTCCTCCGG
GGGTTACACCCATCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_b01.g1 MSMg01no375_b01.g1 CHROMAT_FILE:
MSMg01no375_b01.g1 PHD_FILE: MSMg01no375_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:32 2005
         (305 letters)



>mm_chr7_59692458_59693161
          Length = 704

 Score =  497 bits (257), Expect = e-145
 Identities = 293/305 (96%), Gaps = 1/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcccataaacccctgaatctctccttagatgggagataaaaatctatttgctttaact 60
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 504 tggcccataaacccctgaatctctccgtagatgggatataaaaatctatttgctttaact 445

                                                                       
Query: 61  atgaatgtgaatacagaatgcataacatttgcaatgctgtgatgaataatttaaaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 atgaatgtgaatacagaatgcataacatttgcaatgctgtgatgaataatttaaaaagca 385

                                                                       
Query: 121 acacagtaaagccacaaagcataaataagtgatgtgtaagtatttatgagttttttaaga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacagtaaag-cacaaagcataaataagtgatgtgtaagtatttatgagttttttaaga 326

                                                                       
Query: 181 caaaataatgtgttagggagattgccttcctaaataaaagcaaaaataatgagatgatga 240
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||
Sbjct: 325 caaaataatgtgttagggagattgccttcctcaataaaagcgaaaataatgggataatga 266

                                                                       
Query: 241 aagcaaaactgtatgttactttgggaatttgctctttaattgtttttctctgcgtgatgt 300
           |||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct: 265 aagcaatactgtatgttactttgggaatttgctctttaattttttttttctgggtgatgt 206

                
Query: 301 gaatg 305
           |||||
Sbjct: 205 gaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 704
Length adjustment: 9
Effective length of query: 296
Effective length of database: 695
Effective search space:   205720
Effective search space used:   205720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)