Query= MSMg01no375_d06.b1 MSMg01no375_d06.b1 CHROMAT_FILE:
MSMg01no375_d06.b1 PHD_FILE: MSMg01no375_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:43 2005
(511 letters)
>mm_chr7_99089156_99090064
Length = 909
Score = 940 bits (486), Expect = 0.0
Identities = 502/508 (98%), Gaps = 4/508 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcacaaaggctattcacaatcagaagttagaccacagggattaaacagaaact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattcagcacaaaggctattcacaatcagaagttagaccacagggattaaacagaaact 650
Query: 65 ccctagagcctaggaatgtaagaataaccaacagaaaactttgatgctttatctcccaag 124
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 649 ccctagagcctaggaatgtaagaataaccaacagaaaac--tgatgctttatctcccaag 592
Query: 125 tttgcatacattgtgaaatgatctttctggtgatttgtgcataccactattctgataaca 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttgcatacatcgtgaaatgatctttctggtgatttgtgcataccactattctgataaca 532
Query: 185 ctttttataaaggaagaggagatagtgactccttggagatataactcatcttagttagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctttttataaaggaagaggagatagtgactccttggagatataactcatcttagttagac 472
Query: 245 agacattaggcttgggagcctttggagctctggataaactcttaccgcataatgggtttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agacattaggcttgggagcctttggagctctggataaactcttaccgcataatgggtttt 412
Query: 305 ttgactccacctctgggtttccagaagactattgctcatgaaaacagattcatctgagag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttgactccacctctgggtttccagaagactattgctcatgaaaacagattcatctgagag 352
Query: 365 tatgctaaagagatgggaggaataattatctccttaatgagataatgtacttttccttcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tatgctaaagagatgggaggaataattatctccttaatgagataatgtacttttccttcc 292
Query: 425 ccaaagccctttccaggatggaacagctcac-gaagcttccatcatgctgcactgctaag 483
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 291 ccaaagccctttccaggatggaacagctcacag-agcttccatcatgctgcactgctaag 233
Query: 484 tctgcctgcttttctctttcatctttag 511
||||||||||||||| ||||||||||||
Sbjct: 232 tctgcctgcttttctttttcatctttag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 909
Length adjustment: 10
Effective length of query: 501
Effective length of database: 899
Effective search space: 450399
Effective search space used: 450399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_d06.g1 MSMg01no375_d06.g1 CHROMAT_FILE:
MSMg01no375_d06.g1 PHD_FILE: MSMg01no375_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:43 2005
(356 letters)
>mm_chr7_98918148_98918902
Length = 755
Score = 681 bits (352), Expect = 0.0
Identities = 355/356 (99%), Gaps = 1/356 (0%)
Strand = Plus / Plus
Query: 1 ttctgacttagggggcttgtgttggctggagcaaaacctgggcttgatttctgttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgacttagggggcttgtgttggctggagcaaaacctgggcttgatttctgttttttt 260
Query: 61 tgggttttctttagagttttaataatgttgaattatgtattttcctctcaatttaattat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 -gggttttctttagagttttaataatgttgaattatgtattttcctctcaatttaattat 319
Query: 121 tgattcattttgcattgcaatcacagcgtccctcacacaccctgaccctcatccctccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgattcattttgcattgcaatcacagcgtccctcacacaccctgaccctcatccctccct 379
Query: 181 ccccttgatctctgaaaatagtaagattcctcactgggtaccaatccactttgacacctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccccttgatctctgaaaatagtaagattcctcactgggtaccaatccactttgacacctc 439
Query: 241 aagtcactgcaggactaggtacatcctctcaccctcagtccaaccaagagagttccattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagtcactgcaggactaggtacatcctctcaccctcagtccaaccaagagagttccattg 499
Query: 301 tgggaacaggatccacaggcaagcaacagagtctccgctccagttttttgaggacc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgggaacaggatccacaggcaagcaacagagtctccgctccagttttttgaggacc 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 755
Length adjustment: 9
Effective length of query: 347
Effective length of database: 746
Effective search space: 258862
Effective search space used: 258862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
