BAC Information

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BAC

Clone NameMSMg01-375D24
Chromosome7 (Build37)
Map Location 53,634,185 - 53,634,626
singlet/doubletsinglet
Overlap geneMyod1
Upstream geneSnrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
Downstream geneKcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D24.T7 (MSMg01no375_d24.b1)MSMg01-375D24.TJ (MSMg01no375_d24.g1)
ACCAG480850AG480851
length778786
length of high quality
(start - end)		446 (49 - 494)171 (88 - 258)
definitionCHROMAT_FILE: MSMg01no375_d24.b1 PHD_FILE: MSMg01no375_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:47 2005CHROMAT_FILE: MSMg01no375_d24.g1 PHD_FILE: MSMg01no375_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCC
GCGGAATTCCCTACAGCTGGACGTCTGCCAGCCCTTCTTCATTACCCAGC
ACTACCCAGCCTCCGTGCTACCCTTCTGCCACCTACAGGGGTCGCTGCGA
GACAGCCCGCCCAGTTCATAGAGTTTCTTTCTGATCCCCATAGGAAAAGC
CAGAGCCACTTTGTATAAATTAGCGTCTTTATTTCCAACACCTGAGCGAG
CGAGCCTCGAGGCTCGCCCGCTTGAGGAATAAACATACAAAGTTTTTGTT
GCACTACACAGCATGCCTGGGAGATAAATATAGCCCAAGGGGCTCCCGCT
CTGGCCAAGCAACTCTTATTTACACGAATAGATTACAAAAGTCTTATATA
AAAAAATAAGTGGTCCTGAACCGCGGGAAGGGGGAGAGTGGGGTATGGTT
ACACCTGTTACACCTGAGACCTGAGTGGCCTCCGCAAGCTGTGGGGAAAA
GTGGGTGCCAGGAGGGCTCCCGAAAGTGACAAACAAAAGATGTGGAAGGC
AGGGCTTAAGTGTGCAAAGGTCCCCCCCGGGCTTTGAAGAAAAGAATAAC
GCCGGGCCACTCCAGGACAACTTCTTGCCCGTGAGGGGATCCCTAAGGTC
AGGGCCTTTCCTCTGTACCCCTCGAAAAAATAACCTCACCCTGGTGGCGA
CCGTTCCCCTTATTATAGCTATGTGCTTTTTTTTTGCGTTGTTTACAACA
AATAATTTCTTCCTTTCTTTTTTAAGAA

CCCTTTTNNNNCCCCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAA
CAGACTGGGAGGAAGAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGA
AAAAAGCCAAAAGCGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGG
CAGTCGGTTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGTGTAGTGC
GTCAGCAATGCGCAGAGAGGCAATGCGCANAAGAGCAGTGCGCAAAGAGC
CAGTGCGCCAAAGAGGCAGTGCCCACAGAAGGCAATGCCATAAAAGGCAG
GGGCCCAAAAAGGCAAGTGCGCAAAAAGGAAAGGGCAAAACTCTTTTCCT
TCCCCGAAAGGGAAAAGAGGGAAAATCCACAGGGGTTTTCCCGTCCTTTT
AAAGAACCCAAAGGGGGGGGGGGTCTCCCCCCTCCCGGGGAAAAATCCCC
CCCATTTAAAAAAACTCCCCCAAGAGCGGCCCCAAAAATATAGAAAACCC
CGGTGCTTATTTCCTTCCCTGGGGGAAATAAAAACAAGGTCCTCCGCCGC
TGGAGGCCACACTTCTCCCGGTGGGGGGGGCGAAATAAATTGTATATAAA
CCCCCCTCCCCCCCCTAAAGTGGCTTTCAATATATTAAGTTAGGGCATAA
GCGCGTGTTTTCTAAATATTATTATTTCTTATACCGGTCTTCTACCTATA
TACCCCGATTTTTCTTTTTCTTATCAAATATAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d24.b1 MSMg01no375_d24.b1 CHROMAT_FILE:
MSMg01no375_d24.b1 PHD_FILE: MSMg01no375_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:47 2005
         (446 letters)



>mm_chr7_53633981_53634826
          Length = 846

 Score =  832 bits (430), Expect = 0.0
 Identities = 439/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattccctacagctggacgtctgccagcccttcttcattacccagcactacccagcct 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggaattccctacagctggaggtctgccagcccttcttcattacccagcactacccagcct 587

                                                                       
Query: 65  ccgtgctacccttctgccacctacaggggtcgctgcgagacagcccgcccagttcataga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 586 ccgtgctacccttctgccacctacaggggtcgctgcgagacagcccgcccagttcgtaga 527

                                                                       
Query: 125 gtttctttctgatccccataggaaaagccagagccactttgtataaattagcgtctttat 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtttctttctgatccccttaggaaaagccagagccactttgtataaattagcgtctttat 467

                                                                       
Query: 185 ttccaacacctgagcgagcgagcctcgaggctcgcccgcttgaggaataaacatacaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttccaacacctgagcgagcgagcctcgaggctcgcccgcttgaggaataaacatacaaag 407

                                                                       
Query: 245 tttttgttgcactacacagcatgcctgggagataaatatagcccaaggggctcccgctct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tttttgttgcactacacagcatgcctgggagataaatatagcccaaggggctcccgctct 347

                                                                       
Query: 305 ggccaagcaactcttatttacacgaatagattacaaaagtcttatataaaaaaataagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggccaagcaactcttatttacacgaatagattacaaaagtcttatataaaaaaataagtg 287

                                                                       
Query: 365 gtcctgaaccgcgggaagggggagagtggggtatggttacacctgttacacctgagacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtcctgaaccgcgggaagggggagagtggggtatggttacacctgttacacctgagacct 227

                                 
Query: 425 gagtggcctccgcaagctgtgg 446
           ||||||||||||||||||||||
Sbjct: 226 gagtggcctccgcaagctgtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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