BAC Information

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BAC

Clone NameMSMg01-375F12
Chromosome7 (Build37)
Map Location 116,196,164 - 116,196,607
singlet/doubletsinglet
Overlap geneRic3
Upstream geneOlfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub
Downstream geneLmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375F12.T7 (MSMg01no375_f12.b1)MSMg01-375F12.TJ (MSMg01no375_f12.g1)
ACCAG480921AG480922
length809793
length of high quality
(start - end)		461 (47 - 507)446 (78 - 523)
definitionCHROMAT_FILE: MSMg01no375_f12.b1 PHD_FILE: MSMg01no375_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:54 2005CHROMAT_FILE: MSMg01no375_f12.g1 PHD_FILE: MSMg01no375_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTTTGTTTAGCTCTGTATCCAATTTTTTCATAGGTTTATTTGA
TTTTTTGGAGTTCAGCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCAGATTTAGGATTGGTAAAAATCCTTTCTCAATCTGTTTGTGGC
CTTTTTGTCTTATTGACAGTGTCTTTTGCCATACAGAAGCTTTGCAATTT
TATAAGGTCCCATTTGTCCATTCTCGGATCTTACAACACAAGCCATTGCT
GTTCTGTTAAGGAATTTTTTCCTTGTGCCCATATCTTCTAGGCTTTTCCC
CACTTTCTCATCTATAAGTTTCAGAGTCTCTGGTTTTATGTGGAGTTCCT
TGATCCACTTAGACTTTAGCTTTGTACAAGGAGATAGGAATGGATCAATT
CGCATTCTTCTACATGATAACCACCAGTTGTGCCAGCATCATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGGTTTTGTCTCCCTTGTCAAAGATCA
GTGACCCTAGGTGTGTGGGTTCATTTTCTGGGGCTTCATTTCTATTCCTT
GGATCTACCCGGCTGGTTGCTATCTTCACTATCCTGTGTGTTTTTTTTCA
CATTTTGTTCTGTTCCACACTCTTTTTACCTCAGCGGTGGGGCGGTTTTC
CCCCCCAATGTTCTTTTTTTTTTTTTTGAGAATATCTTCTCCTTCTCCTT
TCCTATCTTATATTCCCCTTTCCCCCATAACAATACTCTATCTTTTCCTT
CTATACCCT

NNCCGATGAAGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACATGCAAAGTAGGTGTCAAGG
GCCAAATTAATCCTTTAGGAAGGTACACTTCTACTCTGTCATACTGACCA
AGGATCTGAAAAGGTAGGGTTATGAAAACTGGAACAACTAAGGAAACTGA
GGCACCTAAAAGAGCCAGGAAAGGAACACCAGATGTGGTATTGAGGAGTA
AGACAGAGTCTGTCTCAACTGAGCCCTCTTACAGGGAGGAGGGAAAACTT
CACAGTGGGCCATAAAATCACTTTTTTTATATTACATTCATGAGCAACTA
TGGAGTCTTTGATACAAGGAATAGGCGGTGCCCCCTTCTGTTTGCCATCT
TTCAACTGTTTGTGCTCTGTGCCTCCTCGCCTTTTGCTTGATGACATCTA
GTTTGTCCATCCTTTGTTGTATATAAGAAGACATCCTCAAATTGTAGTCC
CCTGTTTGTGTGTGAATAGAAACATGGAAATGACTCCTGATATGACCAGT
AGATTTATTTTAGACATCTTTCTCATGTACATGTAGCTTCCACCACTATC
AAGAGTCCTCCCAGTTATGTCCGAATACAAAAACCACATCTAACCCCTAA
TTTACACGCTTAATGGCACTAAAATTAAAATGCTTCAATTTCCCGTCCCT
GGGCAATTAACCACAATTTCTTTCCCTCTTTGAAACGGATTAGCTCTTCC
AGAACTCTCTCTGTCTATATATTTTTGTCTTTCCTTTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_f12.g1 MSMg01no375_f12.g1 CHROMAT_FILE:
MSMg01no375_f12.g1 PHD_FILE: MSMg01no375_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:54 2005
         (446 letters)



>mm_chr7_116195964_116196807
          Length = 844

 Score =  781 bits (404), Expect = 0.0
 Identities = 435/450 (96%), Gaps = 10/450 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatgcaaagtaggtgtcaagggccaaattaatcctttaggaaggtacacttctactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aacatgcaaagtaggtgtcaagggccaaattaatcctttaggaaggtacacttctactct 585

                                                                       
Query: 61  gtcatactgaccaaggatctgaaaaggtagggttatgaaaactggaacaactaaggaaac 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gccatactgaccaaggatctgaaaaggtagggttatgaaaactggaacaactaaggaaac 525

                                                                       
Query: 121 tgaggcacctaaaagagccaggaaaggaacaccagatgtggtattgaggagtaagacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgaggcacctaaaagagccaggaaaggaacaccagatgtggtattgaggagtaagacaga 465

                                                                       
Query: 181 gtctgtctcaactgagccctcttacagggaggagggaaaacttcacagtgggccataaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtctgtctcaactgagccctcttacagggaggagggaaaacttcacagtgggccataaaa 405

                                                                       
Query: 241 tcactttttt----tatattacattcatgagcaactatggagtctttgatacaaggaata 296
           ||||     |    |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcac----atgcagtatattacgttcatgagcaactatggagtctttgatacaaggaata 349

                                                                       
Query: 297 ggcggtgcccccttctgtttgccatctttcaactgtttgtgctctgtgcctcctcgcctt 356
           ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 348 ggcggtgtccccttctgtttgccatctttcaactgtttgtgctc--tgcctcctcgcctt 291

                                                                       
Query: 357 ttgcttgatgacatctagtttgtccatcctttgttgtatataagaagacatcctcaaatt 416
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttgcttgatgacatctagtttgcccatcctttgttgtatataagaagacatcctcaaatt 231

                                         
Query: 417 gtagtcccctgtttgtgtgtgaatagaaac 446
           ||||||||||||||||||||||||||||||
Sbjct: 230 gtagtcccctgtttgtgtgtgaatagaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 844
Length adjustment: 10
Effective length of query: 436
Effective length of database: 834
Effective search space:   363624
Effective search space used:   363624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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