BAC Information

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BAC

Clone NameMSMg01-375H11
Chromosome7 (Build37)
Map Location 69,490,736 - 69,491,186
singlet/doubletsinglet
Overlap genenone
Upstream geneB230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375H11.T7 (MSMg01no375_h11.b1)MSMg01-375H11.TJ (MSMg01no375_h11.g1)
ACCAG481013AG481014
length787768
length of high quality
(start - end)
503 (73 - 575)463 (84 - 546)
definitionCHROMAT_FILE: MSMg01no375_h11.b1 PHD_FILE: MSMg01no375_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:04 2005CHROMAT_FILE: MSMg01no375_h11.g1 PHD_FILE: MSMg01no375_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACAAATATTCAAAATCAAAAGAATAAATTACTGATATTCC
CAATGTCAATTGATAAATTAACACAAGAATGAAAAGAAAAATAAGAGAAG
GGAGCAGAAATTGTATTCCACCCAAGACTTAGAGAATTTGTGTAAGATGG
AGCAGAAAGGGTGTAAGATCCAGAGAAACGGGATGCCTGCTATGAGAAAG
TATCTTCTAGTTATGACAGGGAAGTTGCACCCACAATACCACAAATAACA
GAAACACCTAAAGAAGATTTTTTTAAAATAAATGACACCACCTGTTCTTG
TGTCAACCTGGATGGGGGAGAGGGATGTTGTTGACCACACTGCTAACTGA
AGACCTACAGGTAATTAATGGAGGTTATGAGAGAAAGAATGAGAATTCTC
CTGGGACAAGTTCCTTAATAAGTTGTCAAGTCTTGAGAAAATAGCTTTTG
CACACATACACAGGAGCAATACCTAATGGACTTAATAGTCAGTAATTATG
CATACATAACTGTATTATATGAGAGTGGACCATGAGTTTGGGAGCAAATA
GGGTGGCAAAGAAAGAATTTGCTGGTTAAAGAAACCGCCGAAATAATGTA
AAAGCCTCCCCTTTGGAATTTCTTTTGGGTGGTCGAAAAATTCCTTGGAA
AAATTTTTCAAAAATAACTTCCCAAAGAATTTTTAATTGGGGGTTCCACC
TAGGTTGGAGGGGGAAACAATACCCCCCCCGAATTAT
NNNCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGAATTAATGTTCA
ACTTAAAAGGAGCCCAGTATAAACTGTGGTGCTGCTTAACCTCAGAGATC
CAAAGCACCCCTACAGATAATGGTTTCATCTATTCAAAGAAATCCTTCTG
AAGAAGATCAACACACTATTATAGAGAGAAGGAAGAGAATTTGGGATAAT
GTTTAATCACAGAGCACAGACTTTAAGCAGAGAGCACATTTAGCATGAAA
GCTTGGGAGTTGATAGCTACACAATATATTGCTTACTCCTATAGAGACTG
GACAGACATTACATAAAAAGGAATGAAAGGGAAGTAACATTAAGTAAAGG
AAAATAAACCAGTACTGGGGTGTTGTCCATGACTACTCTAAATCCAAGGG
ATATTGGGACTAGAGTTCTAAGAATGTTGGGAATAATTTAGACTTGGGGG
TTATCTTTACATTCAGTTTAAGAGGAGATAGAAAATAAATAAGATACTAC
NCTAGAATTTAAGACNGAAATGCAGGAAACTTACATTAATGGCTCCCAGA
AAAGATTCTAGAGGAGATTCTGAATAAAAAATGGAGACTTTATGTCTTCA
GAACTTTTGGAAAGGAAATTTTTTTTTCCAGGGGGTTTCTCCAAACGGTA
TATGGGAAAAAAATTCCACCGGGGGGAAAAGCTGTTCTTTGGAAACTCCT
CTTTAGAGGCCCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_h11.g1 MSMg01no375_h11.g1 CHROMAT_FILE:
MSMg01no375_h11.g1 PHD_FILE: MSMg01no375_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:04 2005
         (463 letters)



>mm_chr7_69490532_69491394
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 451/451 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattaatgttcaacttaaaaggagcccagtataaactgtggtgctgcttaacctcagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaattaatgttcaacttaaaaggagcccagtataaactgtggtgctgcttaacctcagag 596

                                                                       
Query: 65  atccaaagcacccctacagataatggtttcatctattcaaagaaatccttctgaagaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atccaaagcacccctacagataatggtttcatctattcaaagaaatccttctgaagaaga 536

                                                                       
Query: 125 tcaacacactattatagagagaaggaagagaatttgggataatgtttaatcacagagcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcaacacactattatagagagaaggaagagaatttgggataatgtttaatcacagagcac 476

                                                                       
Query: 185 agactttaagcagagagcacatttagcatgaaagcttgggagttgatagctacacaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agactttaagcagagagcacatttagcatgaaagcttgggagttgatagctacacaatat 416

                                                                       
Query: 245 attgcttactcctatagagactggacagacattacataaaaaggaatgaaagggaagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attgcttactcctatagagactggacagacattacataaaaaggaatgaaagggaagtaa 356

                                                                       
Query: 305 cattaagtaaaggaaaataaaccagtactggggtgttgtccatgactactctaaatccaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cattaagtaaaggaaaataaaccagtactggggtgttgtccatgactactctaaatccaa 296

                                                                       
Query: 365 gggatattgggactagagttctaagaatgttgggaataatttagacttgggggttatctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gggatattgggactagagttctaagaatgttgggaataatttagacttgggggttatctt 236

                                          
Query: 425 tacattcagtttaagaggagatagaaaataa 455
           |||||||||||||||||||||||||||||||
Sbjct: 235 tacattcagtttaagaggagatagaaaataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)