BAC Information

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BAC

Clone NameMSMg01-375I14
Chromosome7 (Build37)
Map Location 126,641,487 - 126,851,260
singlet/doubletdoublet
Overlap gene1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390
Upstream geneCoq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod
Downstream geneThumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375I14.T7 (MSMg01no375_i14.b1)MSMg01-375I14.TJ (MSMg01no375_i14.g1)
ACCAG481065AG481066
length776777
length of high quality
(start - end)		435 (73 - 507)394 (76 - 469)
definitionCHROMAT_FILE: MSMg01no375_i14.b1 PHD_FILE: MSMg01no375_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:09 2005CHROMAT_FILE: MSMg01no375_i14.g1 PHD_FILE: MSMg01no375_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,850,826 - 126,851,260)(126,641,487 - 126,641,880)
sequence
NNGCTCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCC
GCGGAATTCCTTGGTGTTGCACAGCAGTATGGAAGTGTAAGCCAAATAAA
CCCTTTCCTCCCCAACTTGCTTCTTGGTAATGATGTTTGTGCAGGAATAG
AAACCCTGACTAAGACAGGAGGTAAGCATGTGACTGACTGGTCATCTCCC
AGCCCTTACCCTGGATTTTAAGATGGCATATGATTTTGTCCCTATAATGT
ATTAGGTAATATCTTAGGACATTTTAATTGTCATCAACGAAGAAAAAGGA
GAGGACAATGCTAATGGCATCTGCTCAGTATCATAAGGTATACAGAATAG
TTATTTGGTCCAGAATGTCTATACAGTAAGATTCAGATTTCTGGGCCTCC
CTGTATGGTAAAGGAAGCTCTGTAATGTTGTATGGCAGCTTCTGCTTGCG
GCTTAAATGGAGAGTTCTGCCCAGTACCTCTTAAGGTCCTTTTGTACGAG
CATCCGGTACACCGTAGGAGCACTGCACAGGGTCGTGATGGGATATGTGG
TAAGTGTCTGGAACATATAGAAAAACAGACTTGTCTGTAACGGTTCACTT
AAAACCCCGGTTATAGAAGACATCTTATAACTTTTCTTTTCCTTTACTGC
TAATAATTCCTCGGATTAAAAAAAGCAATTTTTTCTCCCTTGGCCCTTAC
GTGCTTGTTTGGGGTTTCTTTATTTCCGGGTGGATTTCCCATTCTTTTAA
TAATCGCTCGTTCTTCTCTCCTTTTN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTGCAATTTGTCTGTAATGCCGG
CTTATGGTGCTGTACGGCTCTGAGCTTTTGGAGATAAAGAGCAGCATGTG
GTTCAAGATATTCAGCTCATAAATCAGGTCCTTATTCTGAAATTGCAAGA
GAAACGTGTCATTCAGAGTATAGACAAGGGTCCCCGCTGTTCCCCTGGAC
TCCTTTGTCACTGACCTCAGGGTTTAACTCAATCACAAAGCCTGTGAGCT
GTTGCTTTATGACTTGATTGATATTTTCTTTGTTTGTACTGTCATTAATA
AGCTCTTGACGTTTCACGATTTTTCCCTTGAGCCAGAGGGAAAGCATGTT
AGACGGCAGTAGCTTTCATAATATATACACCTAACAGATGTAACGAGTAC
AGCCCCGCCCCACTCCCACCCCCATTCCCACCCTGGTTTGTATGTATAAC
ATCTGCGTACTTTGTTCCCTACTACCATTTAACCCATTTTACCCTGAAAA
TCCAATACATTGATTCCCTCCCACTTTCGTTGTGTAAAAGCTTAAGGCTC
TTTTCCCGCTTTCTTTTATTCCCGTCGCCTTTTATTTCCCCTATACTAAT
CTTATTGATTCTTCTATTTTTTTCTATTATTGCTCTCCTTATTCACTTTT
TCTCTTCCTTCCTTTTTCTCCTCTTCATTCTAATATTTTCCTTTTCCTCC
TTCATCTATATATTTATACCCATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_i14.b1 MSMg01no375_i14.b1 CHROMAT_FILE:
MSMg01no375_i14.b1 PHD_FILE: MSMg01no375_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:09 2005
         (435 letters)



>mm_chr7_126850531_126851365
          Length = 835

 Score =  810 bits (419), Expect = 0.0
 Identities = 431/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagtatggaagtgtaagccaaataaaccctttcctccccaacttgcttcttggtaatg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agcagtatggaagtataagccaaataaaccctttcctccccaacttgcttcttggtaatg 671

                                                                       
Query: 61  atgtttgtgcaggaatagaaaccctgactaagacaggaggtaagcatgtgactgactggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 670 atgtttgtgcaggaatagaaaccctgactaagacaggaggtaagcatgcgactgactggt 611

                                                                       
Query: 121 catctcccagcccttaccctggattttaagatggcatatgattttgtccctataatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 catctcccagcccttaccctggattttaagatggcatatgattttgtccctataatgtat 551

                                                                       
Query: 181 taggtaatatcttaggacattttaattgtcatcaacgaagaaaaaggagaggacaatgct 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 550 taggtaatatcttaggacattttaattgtcatgaacgaagaaaaaggagaggacaatgct 491

                                                                       
Query: 241 aatggcatctgctcagtatcataaggtatacagaatagttatttggtccagaatgtctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aatggcatctgctcagtatcataaggtatacagaatagttatttggtccagaatgtctat 431

                                                                       
Query: 301 acagtaagattcagatttctgggcctccctgtatggtaaaggaagctctgtaatgttgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acagtaagattcagatttctgggcctccctgtatggtaaaggaagctctgtaatgttgta 371

                                                                       
Query: 361 tggcagcttctgcttgcggcttaaatggagagttctgcccagtacctcttaaggtccttt 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tggcagcttctgcttgtggcttaaatggagagttctgcccagtacctcttaaggtccttt 311

                          
Query: 421 tgtacgagcatccgg 435
           |||||||||||||||
Sbjct: 310 tgtacgagcatccgg 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_i14.g1 MSMg01no375_i14.g1 CHROMAT_FILE:
MSMg01no375_i14.g1 PHD_FILE: MSMg01no375_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:09 2005
         (394 letters)



>mm_chr7_126641287_126642080
          Length = 794

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgcaatttgtctgtaatgccggcttatggtgctgtacggctctgagcttttggagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgcaatttgtctgtaatgccggcttatggtgctgtacggctctgagcttttggagat 260

                                                                       
Query: 61  aaagagcagcatgtggttcaagatattcagctcataaatcaggtccttattctgaaattg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagagcagcatgtggttcaagatgttcagctcataaatcaggtccttattctgaaattg 320

                                                                       
Query: 121 caagagaaacgtgtcattcagagtatagacaagggtccccgctgttcccctggactcctt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagagaaacctgtcattcagagtatagacaagggtccccgctgttcccctggactcctt 380

                                                                       
Query: 181 tgtcactgacctcagggtttaactcaatcacaaagcctgtgagctgttgctttatgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcactgacctcagggtttaactcaatcacaaagcctgtgagctgttgctttatgactt 440

                                                                       
Query: 241 gattgatattttctttgtttgtactgtcattaataagctcttgacgtttcacgatttttc 300
           |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgagatggtctttgtttgtactgtcattaataagctcttgacgtttcacgatttttc 500

                                                                       
Query: 301 ccttgagccagagggaaagcatgttagacggcagtagctttcataatatatacacctaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgagccagagggaaagcatgttagacggcagtagctttcataatatatacacctaac 560

                                             
Query: 361 agatgtaacgagtacagccccgccccactcccac 394
           |||||||||||| ||||||||||||||| |||||
Sbjct: 561 agatgtaacgagcacagccccgccccacccccac 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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